comparison ideas.xml @ 40:6787b3688ddd draft

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39:460577fdb0dc

#end if
#set smoother_annotation = $smoother_annotation_cond.smoother_annotation
#if str($smoother_annotation) == 'yes':
    -hp
#end if
#if str($log2_num):
    -log2 $log2_num
#end if
#if str($max_states):
    -G $max_states
#end if
#if str($initial_states):
    -C $initial_states
#end if
#if str($max_position_classes):
    -P $max_position_classes
#end if
#if str($max_cell_type_clusters):
    -K $max_cell_type_clusters
#end if
#if str($prior_concentration):
    -A $prior_concentration
#end if
-sample $burnin_num $mcmc_num
-minerr $min_standard_dev
-maxerr $max_standard_dev

40:6787b3688ddd

#end if
#set smoother_annotation = $smoother_annotation_cond.smoother_annotation
#if str($smoother_annotation) == 'yes':
    -hp
#end if
#if $log2_num > 0:
    -log2 $log2_num
#end if
#if $max_states > 0:
    -G $max_states
#end if
#if $initial_states > 0:
    -C $initial_states
#end if
#if $max_position_classes > 0:
    -P $max_position_classes
#end if
#if $max_cell_type_clusters > 0:
    -K $max_cell_type_clusters
#end if
#if $prior_concentration > 0:
    -A $prior_concentration
#end if
-sample $burnin_num $mcmc_num
-minerr $min_standard_dev
-maxerr $max_standard_dev