Mercurial > repos > greg > ideas
comparison ideas.xml @ 68:5fb237a06499 draft
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| author | greg |
|---|---|
| date | Thu, 24 Aug 2017 08:08:26 -0400 |
| parents | 0f186cb552c8 |
| children | 06698231cd52 |
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| 67:0f186cb552c8 | 68:5fb237a06499 |
|---|---|
| 118 <param name="input_type" type="select" label="Select input type"> | 118 <param name="input_type" type="select" label="Select input type"> |
| 119 <option value="datasets" selected="true">Bam, BigWig files</option> | 119 <option value="datasets" selected="true">Bam, BigWig files</option> |
| 120 <option value="data_matrix">Data matrix</option> | 120 <option value="data_matrix">Data matrix</option> |
| 121 </param> | 121 </param> |
| 122 <when value="datasets"> | 122 <when value="datasets"> |
| 123 <repeat name="input_repeat" title="Cell type, Epigenetic factor and Input" min="1"> | 123 <conditional name="cell_type_epigenetic_factor_cond"> |
| 124 <param name="cell_type_name" type="text" value="" label="Cell type name"> | 124 <param name="cell_type_epigenetic_factor" type="select" label="Set cell type and epigenetic factor names by"> |
| 125 <validator type="empty_field"/> | 125 <option value="extract" selected="true">extracting them from the selected input file names</option> |
| 126 <option value="manual">manually setting them for each selected input</option> | |
| 126 </param> | 127 </param> |
| 127 <param name="epigenetic_factor_name" type="text" value="" label="Epigenetic factor name"> | 128 <when value="extract"> |
| 128 <validator type="empty_field"/> | 129 <param name="input" type="data" format="bigwig,bam" multiple="True" label="BAM or BigWig file"> |
| 129 </param> | 130 <validator type="empty_field"/> |
| 130 <param name="input" type="data" format="bigwig,bam" label="BAM or BigWig file"> | 131 <validator type="unspecified_build"/> |
| 131 <validator type="empty_field"/> | 132 </param> |
| 132 <validator type="unspecified_build"/> | 133 <param name="input_name_positions" type="select" display="radio" label="Selected input file name pattern is" help="A '-' character must separate cell type and epigenetic factor names within the selected input file names"> |
| 133 </param> | 134 <option value="cell_first" selected="true">Cell type name - Epigenetic factor name</option> |
| 134 </repeat> | 135 <option value="cell_last">Epigenetic factor name - Cell type name</option> |
| 136 </param> | |
| 137 </when> | |
| 138 <when value="manual"> | |
| 139 <repeat name="input_repeat" title="Cell type, Epigenetic factor and Input" min="1"> | |
| 140 <param name="cell_type_name" type="text" value="" label="Cell type name"> | |
| 141 <validator type="empty_field"/> | |
| 142 </param> | |
| 143 <param name="epigenetic_factor_name" type="text" value="" label="Epigenetic factor name"> | |
| 144 <validator type="empty_field"/> | |
| 145 </param> | |
| 146 <param name="input" type="data" format="bigwig,bam" label="BAM or BigWig file"> | |
| 147 <validator type="empty_field"/> | |
| 148 <validator type="unspecified_build"/> | |
| 149 </param> | |
| 150 </repeat> | |
| 151 </when> | |
| 152 </conditional> | |
| 135 <conditional name="specify_genomic_window_cond"> | 153 <conditional name="specify_genomic_window_cond"> |
| 136 <param name="specify_genomic_window" type="select" label="Select Bed file that defines genomic windows on which to process the data"> | 154 <param name="specify_genomic_window" type="select" label="Select Bed file that defines genomic windows on which to process the data"> |
| 137 <option value="no" selected="true">No</option> | 155 <option value="no" selected="true">No</option> |
| 138 <option value="yes">Yes</option> | 156 <option value="yes">Yes</option> |
| 139 </param> | 157 </param> |