Mercurial > repos > greg > grinder
diff grinder-fa1fa683bcf1/all_fasta.loc.sample @ 0:a41241d67693 default tip
Uploaded
| author | greg |
|---|---|
| date | Wed, 18 Jan 2012 11:45:20 -0500 |
| parents | |
| children |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/grinder-fa1fa683bcf1/all_fasta.loc.sample Wed Jan 18 11:45:20 2012 -0500 @@ -0,0 +1,15 @@ +#This file lists the locations and dbkeys of all the fasta files +#under the "genome" directory (a directory that contains a directory +#for each build). The script extract_fasta.py will generate the file +#all_fasta.loc. +#IMPORTANT: EACH LINE OF THIS FILE HAS TO BE TAB-DELIMITED! +# +#<unique_build_id> <dbkey> <display_name> <file_path> +# +#So, all_fasta.loc could look something like this: +# +#ncbi_refseq_complete_viruses ncbi_refseq_complete_viruses RefSeq complete viruses /path/to/ncbi_refseq_complete_viruses.fna +#ncbi_refseq_complete_microbes ncbi_refseq_complete_microbes RefSeq complete microbes /path/to/ncbi_refseq_complete_microbes.fna +#homo_sapiens_GRCh37 homo_sapiens_GRCh37 Homo sapiens genome /path/to/Homo_sapiens_GRCh37_reference.fna +#gg_named_16S gg_named_16S GreenGenes named 16S strains /path/to/Isolated_named_strains_16S.fna +