comparison grinder-fa1fa683bcf1/all_fasta.loc.sample @ 0:a41241d67693 default tip

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author greg
date Wed, 18 Jan 2012 11:45:20 -0500
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-1:000000000000 0:a41241d67693
1 #This file lists the locations and dbkeys of all the fasta files
2 #under the "genome" directory (a directory that contains a directory
3 #for each build). The script extract_fasta.py will generate the file
4 #all_fasta.loc.
5 #IMPORTANT: EACH LINE OF THIS FILE HAS TO BE TAB-DELIMITED!
6 #
7 #<unique_build_id> <dbkey> <display_name> <file_path>
8 #
9 #So, all_fasta.loc could look something like this:
10 #
11 #ncbi_refseq_complete_viruses ncbi_refseq_complete_viruses RefSeq complete viruses /path/to/ncbi_refseq_complete_viruses.fna
12 #ncbi_refseq_complete_microbes ncbi_refseq_complete_microbes RefSeq complete microbes /path/to/ncbi_refseq_complete_microbes.fna
13 #homo_sapiens_GRCh37 homo_sapiens_GRCh37 Homo sapiens genome /path/to/Homo_sapiens_GRCh37_reference.fna
14 #gg_named_16S gg_named_16S GreenGenes named 16S strains /path/to/Isolated_named_strains_16S.fna
15