comparison filtering.xml @ 3:48edb538c102 draft default tip

Uploaded 3.3.0

2:24884dd48421

<tool id="Filter1" name="Filter (new behavior)" version="1.0.2">
  <description>data on any column using simple expressions</description>
  <command interpreter="python">
    filtering.py $input $out_file1 "$cond" ${input.metadata.columns} "${input.metadata.column_types}"
  </command>
  <inputs>
    <param format="tabular" name="input" type="data" label="Filter" help="Query missing? See TIP below."/>
    <param name="cond" size="40" type="text" value="c1=='chr22'" label="With following condition" help="Double equal signs, ==, must be used as shown above. To filter for an arbitrary string, use the Select tool.">
      <validator type="empty_field" message="Enter a valid filtering condition, see syntax and examples below."/>
    </param>
  </inputs>
  <outputs>

    </test>
    <test>
      <param name="input" value="7.bed"/>
      <param name="cond" value="c1=='chr1' and c3-c2>=2000 and c6=='+'"/>
      <output name="out_file1" file="filter1_test2.bed"/>
    </test>
  </tests>
  <help>

.. class:: warningmark

3:48edb538c102

<tool id="Filter1" name="Filter" version="3.3.0">
  <description>data on any column using simple expressions</description>
  <command interpreter="python">
    filtering.py $input $out_file1 "$cond" ${input.metadata.columns} "${input.metadata.column_types}"
  </command>
  <inputs>
    <param format="tabular" name="input" type="data" label="Filter" help="Dataset missing? See TIP below."/>
    <param name="cond" size="40" type="text" value="c1=='chr22'" label="With following condition" help="Double equal signs, ==, must be used as shown above. To filter for an arbitrary string, use the Select tool.">
      <validator type="empty_field" message="Enter a valid filtering condition, see syntax and examples below."/>
    </param>
  </inputs>
  <outputs>

    </test>
    <test>
      <param name="input" value="7.bed"/>
      <param name="cond" value="c1=='chr1' and c3-c2>=2000 and c6=='+'"/>
      <output name="out_file1" file="filter1_test2.bed"/>
    </test>
    <!-- Test filtering of file with a variable number of columns. -->
    <test>
      <param name="input" value="filter1_in3.sam"/>
      <param name="cond" value="c3=='chr1' and c5>5"/>
      <output name="out_file1" file="filter1_test3.sam"/>
    </test>
    <test>
      <param name="input" value="filter1_inbad.bed"/>
      <param name="cond" value="c1=='chr22'"/>
      <output name="out_file1" file="filter1_test4.bed"/>
    </test>
  </tests>
  <help>

.. class:: warningmark