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comparison sparql-7785ad38967f/sparql/spec/executor_spec.rb @ 0:46996d3b1cfb default tip

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author greg
date Tue, 13 Mar 2012 16:29:09 -0400
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1 # -*- coding: utf-8 -*-
2 require File.expand_path('../executor', File.dirname(__FILE__))
3
4 describe SPARQLExecutor, "は" do
5 include GalaxyTool::Matcher
6
7 before do
8 @tool = SPARQLExecutor.new
9 end
10
11 it "SPARQLエンドポイント指定として '-e' オプションを受けつける" do
12 @tool.should accept_option_with_argument(:endpoint, '-e')
13 end
14 it "SPARQLエンドポイント指定として '--endpoint' オプションを受けつける" do
15 @tool.should accept_option_with_argument(:endpoint, '--endpoint')
16 end
17 it "'--endpoint' オプションを、前後空白を無視して受けつける" do
18 @tool.should evaluate_option('--endpoint', " http://example.com/endpoint\n", "http://example.com/endpoint")
19 end
20 it "クエリ指定は必須である" do
21 @tool.should require_option(:endpoint)
22 end
23
24 it "クエリ指定として '-q' オプションを受けつける" do
25 @tool.should accept_option_with_argument(:query, '-q')
26 end
27 it "クエリ指定として '--query' オプションを受けつける" do
28 @tool.should accept_option_with_argument(:query, '--query')
29 end
30 it "クエリ指定として '--query-file' オプションを受けつける" do
31 @tool.should accept_option_with_argument(:query, '--query-file')
32 end
33 it "'--query-file' オプションを、クエリが書かれたファイルのパスとして受けつける" do
34 @tool.should evaluate_option('--query-file', stub_file("p53\n").path, 'p53')
35 end
36 it "クエリ指定は必須である" do
37 @tool.should require_option(:query)
38 end
39
40 it "出力先指定として '-o' オプションを受けつける" do
41 @tool.should accept_option_with_argument(:output, '-o')
42 end
43 it "出力先指定として '--output' オプションを受けつける" do
44 @tool.should accept_option_with_argument(:output, '--output')
45 end
46 it "出力先指定は必須である" do
47 @tool.should require_option(:output)
48 end
49
50 it "Info出力先指定として '--info' オプションを受けつける" do
51 @tool.should accept_option_with_argument(:info, '--info')
52 end
53 it "Info出力先の規定値は標準出力である" do
54 @tool.should set_default_option_value(:info, '/dev/stdout')
55 end
56
57 describe "エンドポイント、クエリ、出力先を指定して実行すると" do
58 before do
59 @tool.should_receive(:search).and_return do |client, query|
60 client.should_receive(:parsed_xml) do |parse|
61 REXML::Document.new(<<-EOT).root
62 <?xml version="1.0" ?>
63 <sparql xmlns="http://www.w3.org/2005/sparql-results#" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.w3.org/2001/sw/DataAccess/rf1/result2.xsd">
64 <head>
65 <variable name="s"/>
66 <variable name="p"/>
67 <variable name="o"/>
68 </head>
69 <results distinct="false" ordered="true">
70 <result>
71 <binding name="s"><uri>http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-uri-fn</uri></binding>
72 <binding name="p"><uri>http://www.openlinksw.com/schemas/virtrdf#qmfShortOfLongTmpl</uri></binding>
73 <binding name="o"><literal> ^{custom-verbatim-1}^_INVERSE (__id2in (^{tree}^))</literal></binding>
74 </result>
75 <result>
76 <binding name="s"><uri>http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-uri-fn</uri></binding>
77 <binding name="p"><uri>http://www.openlinksw.com/schemas/virtrdf#qmfShortOfUriTmpl</uri></binding>
78 <binding name="o"><literal> ^{custom-verbatim-1}^_INVERSE (^{tree}^)</literal></binding>
79 </result>
80 <result>
81 <binding name="s"><uri>http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-literal-fn</uri></binding>
82 <binding name="p"><uri>http://www.openlinksw.com/schemas/virtrdf#qmfShortOfUriTmpl</uri></binding>
83 <binding name="o"><literal> ^{custom-verbatim-1}^_INVERSE (^{tree}^)</literal></binding>
84 </result>
85 <result>
86 <binding name="s"><uri>http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-literal-fn</uri></binding>
87 <binding name="p"><uri>http://www.openlinksw.com/schemas/virtrdf#qmfShortOfLongTmpl</uri></binding>
88 <binding name="o"><literal> ^{custom-verbatim-1}^_INVERSE (__ro2sq /*l*/ (^{tree}^))</literal></binding>
89 </result>
90 <result>
91 <binding name="s"><uri>http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-dt</uri></binding>
92 <binding name="p"><uri>http://www.openlinksw.com/schemas/virtrdf#qmfShortOfSqlvalTmpl</uri></binding>
93 <binding name="o"><literal> ^{sqlval-of-tree}^^{as-name-0}^^{comma-cut}^NULL^{as-name-1}^</literal></binding>
94 </result>
95 </results>
96 </sparql>
97 EOT
98 end
99
100 client.query(query)
101 end
102
103 @url = "http://www.semantic-systems-biology.org/biogateway/endpoint"
104 @query = "select * where { ?s ?p ?o . } limit 5"
105 @info = stub_stdout
106 @output = stub_file
107 @tool.run ["-q", @query, "-e", @url, "-o", @output.path]
108 end
109
110 it "SPARQL検索を行い、ID、URL、タイトル、ランクをタブ区切りで表示する" do
111 @output.should be_output(<<-EOT)
112 ?s ?p ?o
113 <http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-uri-fn> <http://www.openlinksw.com/schemas/virtrdf#qmfShortOfLongTmpl> " ^{custom-verbatim-1}^_INVERSE (__id2in (^{tree}^))"
114 <http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-uri-fn> <http://www.openlinksw.com/schemas/virtrdf#qmfShortOfUriTmpl> " ^{custom-verbatim-1}^_INVERSE (^{tree}^)"
115 <http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-literal-fn> <http://www.openlinksw.com/schemas/virtrdf#qmfShortOfUriTmpl> " ^{custom-verbatim-1}^_INVERSE (^{tree}^)"
116 <http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-literal-fn> <http://www.openlinksw.com/schemas/virtrdf#qmfShortOfLongTmpl> " ^{custom-verbatim-1}^_INVERSE (__ro2sq /*l*/ (^{tree}^))"
117 <http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-dt> <http://www.openlinksw.com/schemas/virtrdf#qmfShortOfSqlvalTmpl> " ^{sqlval-of-tree}^^{as-name-0}^^{comma-cut}^NULL^{as-name-1}^"
118 EOT
119 end
120 end
121
122 describe "結果の途中に改行のテキストノードを含むレスポンスを得るようなエンドポイントに対するクエリだったとしても" do
123 before do
124 @tool.should_receive(:search).and_return do |client, query|
125 client.should_receive(:parsed_xml) do |parse|
126 REXML::Document.new(<<-EOT).root
127 <?xml version="1.0" ?>
128 <sparql xmlns="http://www.w3.org/2005/sparql-results#" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.w3.org/2001/sw/DataAccess/rf1/result2.xsd">
129 <head>
130 <variable name="s"/>
131 <variable name="p"/>
132 <variable name="o"/>
133 </head>
134 <results distinct="false" ordered="true">
135 <result>
136 <binding name="s">
137 <uri>http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-uri-fn</uri>
138 </binding>
139 <binding name="p">
140 <uri>http://www.openlinksw.com/schemas/virtrdf#qmfShortOfLongTmpl</uri>
141 </binding>
142 <binding name="o">
143 <literal> ^{custom-verbatim-1}^_INVERSE (__id2in (^{tree}^))</literal>
144 </binding>
145 </result>
146 <result>
147 <binding name="s"><uri>http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-uri-fn</uri></binding>
148 <binding name="p"><uri>http://www.openlinksw.com/schemas/virtrdf#qmfShortOfUriTmpl</uri></binding>
149 <binding name="o"><literal> ^{custom-verbatim-1}^_INVERSE (^{tree}^)</literal></binding>
150 </result>
151 <result>
152 <binding name="s"><uri>http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-literal-fn</uri></binding>
153 <binding name="p"><uri>http://www.openlinksw.com/schemas/virtrdf#qmfShortOfUriTmpl</uri></binding>
154 <binding name="o"><literal> ^{custom-verbatim-1}^_INVERSE (^{tree}^)</literal></binding>
155 </result>
156 <result>
157 <binding name="s"><uri>http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-literal-fn</uri></binding>
158 <binding name="p"><uri>http://www.openlinksw.com/schemas/virtrdf#qmfShortOfLongTmpl</uri></binding>
159 <binding name="o"><literal> ^{custom-verbatim-1}^_INVERSE (__ro2sq /*l*/ (^{tree}^))</literal></binding>
160 </result>
161 <result>
162 <binding name="s"><uri>http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-dt</uri></binding>
163 <binding name="p"><uri>http://www.openlinksw.com/schemas/virtrdf#qmfShortOfSqlvalTmpl</uri></binding>
164 <binding name="o"><literal> ^{sqlval-of-tree}^^{as-name-0}^^{comma-cut}^NULL^{as-name-1}^</literal></binding>
165 </result>
166 </results>
167 </sparql>
168 EOT
169 end
170
171 client.query(query)
172 end
173
174 @url = "http://www.semantic-systems-biology.org/biogateway/endpoint"
175 @query = "select * where { ?s ?p ?o . } limit 5"
176 @info = stub_stdout
177 @output = stub_file
178 @tool.run ["-q", @query, "-e", @url, "-o", @output.path]
179 end
180
181 it "SPARQL検索を行い、ID、URL、タイトル、ランクをタブ区切りで表示する" do
182 @output.should be_output(<<-EOT)
183 ?s ?p ?o
184 <http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-uri-fn> <http://www.openlinksw.com/schemas/virtrdf#qmfShortOfLongTmpl> " ^{custom-verbatim-1}^_INVERSE (__id2in (^{tree}^))"
185 <http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-uri-fn> <http://www.openlinksw.com/schemas/virtrdf#qmfShortOfUriTmpl> " ^{custom-verbatim-1}^_INVERSE (^{tree}^)"
186 <http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-literal-fn> <http://www.openlinksw.com/schemas/virtrdf#qmfShortOfUriTmpl> " ^{custom-verbatim-1}^_INVERSE (^{tree}^)"
187 <http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-literal-fn> <http://www.openlinksw.com/schemas/virtrdf#qmfShortOfLongTmpl> " ^{custom-verbatim-1}^_INVERSE (__ro2sq /*l*/ (^{tree}^))"
188 <http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-dt> <http://www.openlinksw.com/schemas/virtrdf#qmfShortOfSqlvalTmpl> " ^{sqlval-of-tree}^^{as-name-0}^^{comma-cut}^NULL^{as-name-1}^"
189 EOT
190 end
191 end
192
193 describe "Blank Nodeを含むレスポンスとなるクエリだったとしても" do
194 before do
195 @tool.should_receive(:search).and_return do |client, query|
196 client.should_receive(:parsed_xml) do |parse|
197 REXML::Document.new(<<-EOT).root
198 <?xml version="1.0" ?>
199 <sparql xmlns="http://www.w3.org/2005/sparql-results#" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.w3.org/2001/sw/DataAccess/rf1/result2.xsd">
200 <head>
201 <variable name="s"/>
202 <variable name="p"/>
203 <variable name="o"/>
204 </head>
205 <results distinct="false" ordered="true">
206 <result>
207 <binding name="s">
208 <bnode>nodeID://b196899188</bnode>
209 </binding>
210 <binding name="p">
211 <uri>http://www.openlinksw.com/schemas/virtrdf#qmfShortOfLongTmpl</uri>
212 </binding>
213 <binding name="o">
214 <literal> ^{custom-verbatim-1}^_INVERSE (__id2in (^{tree}^))</literal>
215 </binding>
216 </result>
217 <result>
218 <binding name="s"><uri>http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-uri-fn</uri></binding>
219 <binding name="p"><uri>http://www.openlinksw.com/schemas/virtrdf#qmfShortOfUriTmpl</uri></binding>
220 <binding name="o"><literal> ^{custom-verbatim-1}^_INVERSE (^{tree}^)</literal></binding>
221 </result>
222 <result>
223 <binding name="s"><uri>http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-literal-fn</uri></binding>
224 <binding name="p"><uri>http://www.openlinksw.com/schemas/virtrdf#qmfShortOfUriTmpl</uri></binding>
225 <binding name="o"><literal> ^{custom-verbatim-1}^_INVERSE (^{tree}^)</literal></binding>
226 </result>
227 <result>
228 <binding name="s"><uri>http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-literal-fn</uri></binding>
229 <binding name="p"><uri>http://www.openlinksw.com/schemas/virtrdf#qmfShortOfLongTmpl</uri></binding>
230 <binding name="o"><literal> ^{custom-verbatim-1}^_INVERSE (__ro2sq /*l*/ (^{tree}^))</literal></binding>
231 </result>
232 <result>
233 <binding name="s"><uri>http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-dt</uri></binding>
234 <binding name="p"><uri>http://www.openlinksw.com/schemas/virtrdf#qmfShortOfSqlvalTmpl</uri></binding>
235 <binding name="o"><literal> ^{sqlval-of-tree}^^{as-name-0}^^{comma-cut}^NULL^{as-name-1}^</literal></binding>
236 </result>
237 </results>
238 </sparql>
239 EOT
240 end
241
242 client.query(query)
243 end
244
245 @url = "http://www.semantic-systems-biology.org/biogateway/endpoint"
246 @query = "select * where { ?s ?p ?o . } limit 5"
247 @info = stub_stdout
248 @output = stub_file
249 @tool.run ["-q", @query, "-e", @url, "-o", @output.path]
250 end
251
252 it "SPARQL検索を行い、ID、URL、タイトル、ランクをタブ区切りで表示する" do
253 @output.should be_output(<<-EOT)
254 ?s ?p ?o
255 _:nodeID://b196899188 <http://www.openlinksw.com/schemas/virtrdf#qmfShortOfLongTmpl> " ^{custom-verbatim-1}^_INVERSE (__id2in (^{tree}^))"
256 <http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-uri-fn> <http://www.openlinksw.com/schemas/virtrdf#qmfShortOfUriTmpl> " ^{custom-verbatim-1}^_INVERSE (^{tree}^)"
257 <http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-literal-fn> <http://www.openlinksw.com/schemas/virtrdf#qmfShortOfUriTmpl> " ^{custom-verbatim-1}^_INVERSE (^{tree}^)"
258 <http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-literal-fn> <http://www.openlinksw.com/schemas/virtrdf#qmfShortOfLongTmpl> " ^{custom-verbatim-1}^_INVERSE (__ro2sq /*l*/ (^{tree}^))"
259 <http://www.openlinksw.com/virtrdf-data-formats#sql-varchar-dt> <http://www.openlinksw.com/schemas/virtrdf#qmfShortOfSqlvalTmpl> " ^{sqlval-of-tree}^^{as-name-0}^^{comma-cut}^NULL^{as-name-1}^"
260 EOT
261 end
262 end
263
264 end