# HG changeset patch
# User greg
# Date 1452451964 18000
# Node ID 4dc6890db1123e96ee97d0e872b88965fa909426
# Parent  3fb7f36c2c8a82b86d86c30fd28dcac78cb23a49
Uploaded

diff -r 3fb7f36c2c8a -r 4dc6890db112 fasta_extract.xml
--- a/fasta_extract.xml	Sun Jan 10 13:52:36 2016 -0500
+++ b/fasta_extract.xml	Sun Jan 10 13:52:44 2016 -0500
@@ -12,11 +12,11 @@
                 --input "$i" "${i.hid}"
             #end for
             #if str($reference_genome_cond.reference_genome_source) == "cached":
-                #set genome_file = $reference_genome_cond.reference_genome.fields.path
+                #set genome_file = "$reference_genome_cond.reference_genome.fields.path"
             #else:
-                #set genome_file = $reference_genome_cond.reference_genome
+                #set genome_file = "$reference_genome_cond.reference_genome"
             #end if
-            --genome_file "$genome_file"
+            --genome_file $genome_file
             --subtract_from_start $subtract_from_start
             --add_to_end $add_to_end
             --extend_existing $extend_existing