Mercurial > repos > greg > fasta_extract
diff fasta_extract.xml @ 6:d077d91065ea draft
Uploaded
author | greg |
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date | Sun, 10 Jan 2016 14:15:34 -0500 |
parents | 4dc6890db112 |
children | b740d423ce07 |
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--- a/fasta_extract.xml Sun Jan 10 14:15:26 2016 -0500 +++ b/fasta_extract.xml Sun Jan 10 14:15:34 2016 -0500 @@ -7,6 +7,7 @@ <command> <![CDATA[ mkdir -p output_dir && + mkdir -p output_orphan_dir && python $__tool_directory__/fasta_extract.py #for $i in $inputs: --input "$i" "${i.hid}" @@ -54,7 +55,10 @@ </param> </inputs> <outputs> - <collection name="fasta_extract_output" type="list" label="Extract fasta sequences ${on_string}"> + <collection name="fasta_extract_output_orphan" type="list" label="Extract fasta sequences (orphans) on ${on_string}"> + <discover_datasets pattern="(?P<designation>.*)" directory="output_orphan_dir" ext="gff" visible="false" /> + </collection> + <collection name="fasta_extract_output" type="list" label="Extract fasta sequences on ${on_string}"> <discover_datasets pattern="(?P<designation>.*)" directory="output_dir" ext="fasta" visible="false" /> </collection> </outputs>