Mercurial > repos > greg > fasta_extract

diff fasta_extract.py @ 3:79167132946d draft

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Uploaded
author greg
date Sun, 10 Jan 2016 13:56:47 -0500
parents 3fb7f36c2c8a
children 99c868b492bb
line wrap: on
line diff
--- a/fasta_extract.py	Sun Jan 10 13:52:44 2016 -0500
+++ b/fasta_extract.py	Sun Jan 10 13:56:47 2016 -0500
@@ -45,13 +45,13 @@
     extend_existing = args.extend_existing == 'existing'
     consider_strand = args.strand == 'yes'
     reader = csv.reader(open(input_filename, 'rU'), delimiter='\t')
-    fasta_output_path = get_output_path(args.hid,
+    fasta_output_path = get_output_path(hid,
                                         args.subtract_from_start,
                                         args.add_to_end,
                                         extend_existing,
                                         consider_strand)
     output = open(fasta_output_path, 'wb')
-    gff_output_path = get_output_path(args.hid,
+    gff_output_path = get_output_path(hid,
                                       args.subtract_from_start,
                                       args.add_to_end,
                                       extend_existing,