# HG changeset patch # User greg # Date 1512053610 18000 # Node ID b4c65a54aa7d49cad5d4886709c128802e61778c # Parent 221c1fe8be2c389551e22aeb19b43b930d1582ac Uploaded diff -r 221c1fe8be2c -r b4c65a54aa7d dmri.py --- a/dmri.py Thu Nov 30 09:46:09 2017 -0500 +++ b/dmri.py Thu Nov 30 09:53:30 2017 -0500 @@ -44,6 +44,10 @@ img = nibabel.load(fdwi) else: img, gtab, labels = read_stanford_labels() + fdwi = os.path.join(input_dir, 'HARDI150.nii.gz') + fbval = os.path.join(input_dir, 'HARDI150.bval') + fbvec = os.path.join(input_dir, 'HARDI150.bvec') + data = img.get_data() # data is a 4D array where the first 3 dimensions are the i, j, # k voxel coordinates and the last dimension is the number of