view dmri.xml @ 31:e9bb4e93202a draft

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<tool id="dmri" name="Download dMRI" version="0.13.0">
    <description>dataset</description>
    <requirements>
        <requirement type="package" version="0.13.0">dipy</requirement>
    </requirements>
    <command detect_errors="exit_code"><![CDATA[
python '$__tool_directory__/dmri.py'
--drmi_dataset_type '$drmi_dataset_type_cond.drmi_dataset_type'
--drmi_dataset $drmi_dataset
--output_png '$output_png'
--output_nifti1 '$output_nifti1'
--output_nifti1_extra_files '$output_nifti1.files_path'
&>/dev/null
    ]]></command>
    <inputs>
        <conditional name="drmi_dataset_type_cond">
            <param name="drmi_dataset_type" type="select" label="Select download type">
                <option value="dataset" selected="true">Dataset only</option>
                <option value="dataset and label map">Dataset and label map</option>
            </param>
            <when option="dataset"/>
            <when option="map"/>
        </conditional>
        <param name="drmi_dataset" type="select" label="dRMI dataset">
            <option value="stanford_hardi" selected="true">stanford_hardi</option>
            <option value="sherbrooke_3shell">sherbrooke_3shell</option>
        </param>
    </inputs>
    <outputs>
        <data name="output_png" format="png" label="${tool.name}: middle axial slice without (left) and with (right) diffusion weighting" />
        <data name="output_nifti1" format="nifti1" label="${tool.name}: ($drmi_dataset_type_cond['drmi_dataset_type']) Nifti1 image" />
    </outputs>
    <tests>
        <test>
        </test>
    </tests>
    <help>
**What it does**

-----

**Options**

    </help>
    <citations>
    </citations>
</tool>