Mercurial > repos > greg > drmi
diff dmri.py @ 33:b4c65a54aa7d draft
Uploaded
author | greg |
---|---|
date | Thu, 30 Nov 2017 09:53:30 -0500 |
parents | 221c1fe8be2c |
children | 013144510199 |
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--- a/dmri.py Thu Nov 30 09:46:09 2017 -0500 +++ b/dmri.py Thu Nov 30 09:53:30 2017 -0500 @@ -44,6 +44,10 @@ img = nibabel.load(fdwi) else: img, gtab, labels = read_stanford_labels() + fdwi = os.path.join(input_dir, 'HARDI150.nii.gz') + fbval = os.path.join(input_dir, 'HARDI150.bval') + fbvec = os.path.join(input_dir, 'HARDI150.bvec') + data = img.get_data() # data is a 4D array where the first 3 dimensions are the i, j, # k voxel coordinates and the last dimension is the number of