comparison dmri.xml @ 40:1e2dad266344 draft

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39:24c3ca0fd7fa

    </requirements>
    <command detect_errors="exit_code"><![CDATA[
python '$__tool_directory__/dmri.py'
--drmi_dataset_type '$drmi_dataset_type_cond.drmi_dataset_type'
--drmi_dataset $drmi_dataset
--output_png '$output_png'
--output_nifti1 '$output_nifti1'
--output_nifti1_extra_files '$output_nifti1.files_path'
&>/dev/null
    ]]></command>
    <inputs>

            <option value="stanford_hardi" selected="true">stanford_hardi</option>
            <option value="stanford_t1">stanford_t1</option>
        </param>
    </inputs>
    <outputs>
        <data name="output_png" format="png" label="${tool.name}: middle axial slice without (left) and with (right) diffusion weighting" />
        <data name="output_nifti1" format="nifti1" label="${tool.name}: ($drmi_dataset_type_cond['drmi_dataset_type']) Nifti1 image" />
    </outputs>
    <tests>
        <test>
        </test>
    </tests>

40:1e2dad266344

    </requirements>
    <command detect_errors="exit_code"><![CDATA[
python '$__tool_directory__/dmri.py'
--drmi_dataset_type '$drmi_dataset_type_cond.drmi_dataset_type'
--drmi_dataset $drmi_dataset
#if str($drmi_dataset) == "stanford_hardi":
    --output_png '$output_png'
#end if
--output_nifti1 '$output_nifti1'
--output_nifti1_extra_files '$output_nifti1.files_path'
&>/dev/null
    ]]></command>
    <inputs>

            <option value="stanford_hardi" selected="true">stanford_hardi</option>
            <option value="stanford_t1">stanford_t1</option>
        </param>
    </inputs>
    <outputs>
        <data name="output_png" format="png" label="${tool.name}: middle axial slice without (left) and with (right) diffusion weighting">
            <filter>drmi_dataset == 'stanford_hardi'</filter>
        </data>
        <data name="output_nifti1" format="nifti1" label="dRMI dataset $drmi_dataset: ($drmi_dataset_type_cond['drmi_dataset_type']) Nifti1 image" />
    </outputs>
    <tests>
        <test>
        </test>
    </tests>