# HG changeset patch
# User greg
# Date 1448370948 18000
# Node ID 00155140684834f521a1f11f5c21925192f2aa3a
# Parent  2e0ddcc726f9a26be456178d97c640cba55427af
Uploaded

diff -r 2e0ddcc726f9 -r 001551406848 cwpair2.py
--- a/cwpair2.py	Tue Nov 24 08:15:40 2015 -0500
+++ b/cwpair2.py	Tue Nov 24 08:15:48 2015 -0500
@@ -27,7 +27,6 @@
     parser.add_argument('--relative_threshold', dest='relative_threshold', type=float, default=0.0, help='Percentage to filter the 95th percentile.')
     parser.add_argument('--absolute_threshold', dest='absolute_threshold', type=float, default=0.0, help='Absolute value to filter.')
     parser.add_argument('--output_files', dest='output_files', default='simple', help='Restrict output dataset collections.')
-    parser.add_argument('--sort_chromosome', dest='sort_chromosome', default='asc', help='Sort output by chromosome.')
     parser.add_argument('--sort_score', dest='sort_score', default='no', help='Sort output by score.')
     parser.add_argument('--statistics_output', dest='statistics_output', help='Statistics output file.')
     args = parser.parse_args()
@@ -50,7 +49,6 @@
                                           args.down_distance,
                                           args.binsize,
                                           args.output_files,
-                                          args.sort_chromosome,
                                           args.sort_score)
         statistics.extend(stats)
     # Accumulate statistics.