comparison cwpair2.py @ 3:430a5bdc55a3 draft

Uploaded

2:279cdc63bcff

    parser.add_argument('--binsize', dest='binsize', type=int, default=1, help='Width of bins for plots and mode.')
    parser.add_argument('--threshold_format', dest='threshold_format', help='Percentage to filter the 95th percentile.')
    parser.add_argument('--relative_threshold', dest='relative_threshold', type=float, default=0.0, help='Percentage to filter the 95th percentile.')
    parser.add_argument('--absolute_threshold', dest='absolute_threshold', type=float, default=0.0, help='Absolute value to filter.')
    parser.add_argument('--output_files', dest='output_files', default='simple', help='Restrict output dataset collections.')
    parser.add_argument('--plot_format', dest='plot_format', default=None, help='Format of output graph.')
    parser.add_argument('--sort_chromosome', dest='sort_chromosome', default='asc', help='Sort output by chromosome.')
    parser.add_argument('--sort_score', dest='sort_score', default='no', help='Sort output by score.')
    parser.add_argument('--statistics_output', dest='statistics_output', help='Statistics output file.')
    args = parser.parse_args()

                                          threshold,
                                          args.up_distance,
                                          args.down_distance,
                                          args.binsize,
                                          args.output_files,
                                          args.plot_format,
                                          args.sort_chromosome,
                                          args.sort_score)
        statistics.extend(stats)
    # Accumulate statistics.
    by_file = {}

3:430a5bdc55a3

    parser.add_argument('--binsize', dest='binsize', type=int, default=1, help='Width of bins for plots and mode.')
    parser.add_argument('--threshold_format', dest='threshold_format', help='Percentage to filter the 95th percentile.')
    parser.add_argument('--relative_threshold', dest='relative_threshold', type=float, default=0.0, help='Percentage to filter the 95th percentile.')
    parser.add_argument('--absolute_threshold', dest='absolute_threshold', type=float, default=0.0, help='Absolute value to filter.')
    parser.add_argument('--output_files', dest='output_files', default='simple', help='Restrict output dataset collections.')
    parser.add_argument('--sort_chromosome', dest='sort_chromosome', default='asc', help='Sort output by chromosome.')
    parser.add_argument('--sort_score', dest='sort_score', default='no', help='Sort output by score.')
    parser.add_argument('--statistics_output', dest='statistics_output', help='Statistics output file.')
    args = parser.parse_args()

                                          threshold,
                                          args.up_distance,
                                          args.down_distance,
                                          args.binsize,
                                          args.output_files,
                                          args.sort_chromosome,
                                          args.sort_score)
        statistics.extend(stats)
    # Accumulate statistics.
    by_file = {}