diff create_streamlines.xml @ 0:1c5508f627ec draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/create_streamlines.xml	Tue Nov 28 14:15:52 2017 -0500
@@ -0,0 +1,46 @@
+<tool id="create_streamlines" name="Create streamlines" version="0.13.0">
+    <description>within brain images</description>
+    <requirements>
+        <requirement type="package" version="0.13.0">dipy</requirement>
+    </requirements>
+    <command detect_errors="exit_code"><![CDATA[
+python '$__tool_directory__/linear_fascile_evaluation.py'
+--candidates '$candidates'
+--output_trackvis_header '$output_trackvis_header'
+--output_superiorfrontal_nifti '$output_superiorfrontal_nifti'
+--output_connectivity '$output_connectivity'
+--output_corpuscallosum_sagittal '$output_corpuscallosum_sagittal'
+--output_corpuscallosum_axial 'output_corpuscallosum_axial'
+    ]]></command>
+    <inputs>
+        <param name="drmi_dataset" type="select" label="dRMI dataset">
+            <option value="stanford_t1" selected="true">stanford_t1</option>
+        </param>
+    </inputs>
+    <outputs>
+        <data name="output_trackvis_header" format="txt" label="${tool.name}: Superiorfrontal Track Visualization Header" />
+        <data name="output_superiorfrontal_nifti" format="nifti1" label="${tool.name}: Superiorfrontal" />
+        <data name="output_connectivity" format="png" label="${tool.name}: Connectivity" />
+        <data name="output_corpuscallosum_sagittal" format="png" label="${tool.name}: Corpuscallosum Sagittal" />
+        <data name="output_corpuscallosum_axial" format="png" label="${tool.name}: Corpuscallosum Axial" />
+    </outputs>
+    <tests>
+        <test>
+        </test>
+    </tests>
+    <help>
+**What it does**
+
+Uses the target function to target streamlines that either pass through or do
+not pass through some region of the brain, the connectivity_matrix groups function
+to count streamlines based on where in the brain they begin and end and the density
+map function to count the number of streamlines that pass though every voxel of some image.
+
+-----
+
+**Options**
+
+    </help>
+    <citations>
+    </citations>
+</tool>