# HG changeset patch
# User greg
# Date 1542725412 18000
# Node ID 5486fb1fb923cda0a0fe30ffaaf55cfad2aecc25
# Parent  770db64c4cfce0fdf693011ac99471e0c8241f25
Uploaded

diff -r 770db64c4cfc -r 5486fb1fb923 bcftools_sort.xml
--- a/bcftools_sort.xml	Thu Nov 01 10:23:32 2018 -0400
+++ b/bcftools_sort.xml	Tue Nov 20 09:50:12 2018 -0500
@@ -8,11 +8,10 @@
     <expand macro="requirements"/>
     <command detect_errors="exit_code"><![CDATA[
 @PREPARE_ENV@
-@PREPARE_INPUT_FILE@
 #set temp_dir = 'tmp'
 mkdir $temp_dir &&
 bcftools @EXECUTABLE@
-@INPUT_FILE@
+$input_file
 --output-file '$output_file'
 @OUTPUT_TYPE@
 --temp-dir '$temp_dir'