Mercurial > repos > greg > assembly_post_processor

changeset 45:e668628f62b7 draft

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Uploaded
author greg
date Wed, 03 May 2017 10:13:48 -0400
parents 58382c8ed01c
children b7858b1f64f1
files macros.xml
diffstat 1 files changed, 7 insertions(+), 2 deletions(-) [+]
line wrap: on
line diff
--- a/macros.xml	Wed May 03 10:13:37 2017 -0400
+++ b/macros.xml	Wed May 03 10:13:48 2017 -0400
@@ -26,6 +26,11 @@
             <requirement type="package" version="0.8">plant_tribes_kaks_analysis</requirement>
         </requirements>
     </xml>
+    <xml name="requirements_ks_distribution">
+        <requirements>
+            <requirement type="package" version="1.3.0">r-optparse</requirement>
+        </requirements>
+    </xml>
     <xml name="requirements_gene_family_phylogeny_builder">
         <requirements>
             <requirement type="package" version="0.8">plant_tribes_gene_family_phylogeny_builder</requirement>
@@ -40,7 +45,7 @@
         </stdio>
     </xml>
     <xml name="param_codon_alignments">
-        <param name="codon_alignments" type="select" label="Construct orthogroup multiple codon alignments">
+        <param name="codon_alignments" type="select" label="Codon alignments">
             <option value="yes" selected="true">Yes</option>
             <option value="no">No</option>
         </param>
@@ -84,7 +89,7 @@
             </param>
             <when value="mafft" />
             <when value="pasta">
-                <param name="pasta_iter_limit" type="integer" value="3" min="1" label="Maximum number of iterations that the PASTA algorithm will execute" />
+                <param name="pasta_iter_limit" type="integer" value="3" min="1" label="PASTA iteration limit" />
             </when>
         </conditional>
     </xml>