Mercurial > repos > greg > assembly_post_processor

changeset 22:9744a653d503 draft

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Uploaded
author greg
date Mon, 13 Feb 2017 08:07:04 -0500
parents 913c3e0354cc
children fa95f44f2e1a
files assembly_post_processor.xml
diffstat 1 files changed, 0 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/assembly_post_processor.xml	Mon Feb 13 07:59:49 2017 -0500
+++ b/assembly_post_processor.xml	Mon Feb 13 08:07:04 2017 -0500
@@ -135,7 +135,6 @@
  * **Scores matrices** - Scores matrices that reflect the codons preferences in the studied organisms.
  * **Target gene family assembly?** - Select 'Yes' to target gene families to assemble.
  * **List of orthogroup identifiers for target gene families to assemble** - History item with a list of orthogroup identifiers for target gene families to assemble.
- * **Orthogroups or gene families proteins scaffold** - PlantTribes scaffolds data, installed into Galaxy by the PlantTribes Scaffolds Download Data Manager tool.
  * **Protein clustering method** - One of GFam (domain architecture based clustering), OrthoFinder (broadly defined clusters) or OrthoMCL (narrowly defined clusters).
  * **Remove sites in alignments with gaps of** - Removes gappy sites in alignments (i.e. 0.1 removes sites with 90% gaps): [0.0 to 1.0]
  * **De novo transcriptome assembly was performed with strand-specific library?** - Select 'Yes' if de novo transcriptome assembly was performed with strand-specific library.