Mercurial > repos > greg > assembly_post_processor

changeset 2:4eb05d406410 draft

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Uploaded
author greg
date Mon, 19 Dec 2016 09:48:31 -0500
parents 974edd8437e2
children d651432961fb
files assembly_post_processor.xml
diffstat 1 files changed, 2 insertions(+), 1 deletions(-) [+]
line wrap: on
line diff
--- a/assembly_post_processor.xml	Fri Dec 09 08:53:19 2016 -0500
+++ b/assembly_post_processor.xml	Mon Dec 19 09:48:31 2016 -0500
@@ -1,4 +1,4 @@
-<tool id="plant_tribes_assembly_post_processor" name="PlantTribes AssemblyPostProcessor" version="1.0.0">
+<tool id="plant_tribes_assembly_post_processor" name="AssemblyPostProcessor" version="1.0.0">
     <description>pipeline</description>
     <requirements>
         <requirement type="package" version="0.2">plant_tribes_assembly_post_processor</requirement>
@@ -33,6 +33,7 @@
                 #end if
                 --min_length $options_type.min_length
             #end if
+            --scaffold_dir "${GALAXY_DATA_INDEX_DIR}/plant_tribes/scaffolds"
             --num_threads \${GALAXY_SLOTS:-4}
         ]]>
     </command>