Mercurial > repos > greg > assembly_post_processor

changeset 111:233f2d346fd1 draft

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Uploaded
author greg
date Wed, 13 Dec 2017 14:08:36 -0500
parents e2b575f2d346
children 9931076c53d2
files assembly_post_processor.xml
diffstat 1 files changed, 8 insertions(+), 8 deletions(-) [+]
line wrap: on
line diff
--- a/assembly_post_processor.xml	Fri Dec 08 11:22:04 2017 -0500
+++ b/assembly_post_processor.xml	Wed Dec 13 14:08:36 2017 -0500
@@ -34,19 +34,19 @@
     --min_length $options_type.min_length
 #end if
 --num_threads \${GALAXY_SLOTS:-4}
-&>proc.log;
+&>assembly_post_processor_log.txt;
 if [[ $? -ne 0 ]]; then
-    cp proc.log '$output_cds';
-    cp proc.log '$output_pep';
-    cp proc.log '$output_cleaned_cds';
-    cp proc.log '$output_cleaned_pep';
+    cp assembly_post_processor_log.txt '$output_cds';
+    cp assembly_post_processor_log.txt '$output_pep';
+    cp assembly_post_processor_log.txt '$output_cleaned_cds';
+    cp assembly_post_processor_log.txt '$output_cleaned_pep';
     #if str($options_type.options_type_selector) == 'advanced':
         #if str($target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes':
-            cp proc.log '$output_targeted_gene_families_stats';
+            cp assembly_post_processor_log.txt '$output_targeted_gene_families_stats';
         #end if
         #if str($options_type.dereplicate) == 'yes':
-            cp proc.log '$output_cleaned_nr_cds';
-            cp proc.log '$output_cleaned_nr_pep';
+            cp assembly_post_processor_log.txt '$output_cleaned_nr_cds';
+            cp assembly_post_processor_log.txt '$output_cleaned_nr_pep';
         #end if
     #end if
     exit 1;