# HG changeset patch
# User greg
# Date 1486990121 18000
# Node ID dbad8b1486fb1335adcb086363ac35f58cb4c5e6
# Parent  16c5477b3cb33a21e429f386f6ec6d1d96aac36d
Uploaded

diff -r 16c5477b3cb3 -r dbad8b1486fb assembly_post_processor.xml
--- a/assembly_post_processor.xml	Mon Feb 13 07:47:30 2017 -0500
+++ b/assembly_post_processor.xml	Mon Feb 13 07:48:41 2017 -0500
@@ -136,8 +136,7 @@
  * **Scores matrices** - Scores matrices that reflect the codons preferences in the studied organisms.
  * **Target gene family assembly?** - Select 'Yes' to target gene families to assemble.
  * **List of orthogroup identifiers for target gene families to assemble** - History item with a list of orthogroup identifiers for target gene families to assemble.
- * **Orthogroups or gene families proteins scaffold** - PlantTribes scaffolds data which is installed into Galaxy by the `Data Manager PlantTribes Scaffolds Downloader tool
-<https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_plant_tribes_scaffolds_downloader/>`_.
+ * **Orthogroups or gene families proteins scaffold** - PlantTribes scaffolds data which is installed into Galaxy by the Data Manager PlantTribes Scaffolds Downloader tool".
  * **Protein clustering method** - One of GFam (domain architecture based clustering), OrthoFinder (broadly defined clusters) or OrthoMCL (narrowly defined clusters).
  * **Remove sites in alignments with gaps of** - Removes gappy sites in alignments (i.e. 0.1 removes sites with 90% gaps): [0.0 to 1.0]
  * **De novo transcriptome assembly was performed with strand-specific library?** - Select 'Yes' if de novo transcriptome assembly was performed with strand-specific library.