# HG changeset patch
# User greg
# Date 1509038269 14400
# Node ID 9c4afc33bc87e6301398d9d55507f31632b85922
# Parent  11e85af74c7e7760963eaddcf56f6dda042b9842
Uploaded

diff -r 11e85af74c7e -r 9c4afc33bc87 assembly_post_processor.xml
--- a/assembly_post_processor.xml	Thu Oct 26 12:20:04 2017 -0400
+++ b/assembly_post_processor.xml	Thu Oct 26 13:17:49 2017 -0400
@@ -41,15 +41,15 @@
 && mv $output_dir/transcripts.cleaned.pep '$output_cleaned_pep'
 #if str($options_type.options_type_selector) == 'advanced':
     #if str($target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes':
-        && if [ -f $output_dir/targeted_gene_family_assemblies.stats ]; then
+        && if [ -f "$output_dir/targeted_gene_family_assemblies.stats" ]; then
             mv $output_dir/targeted_gene_family_assemblies.stats '$output_targeted_gene_families_stats'
         fi
     #end if
     #if str($options_type.dereplicate) == 'yes':
-        && if [ -f $output_dir/transcripts.cleaned.nr.cds ]; then
+        && if [ -f "$output_dir/transcripts.cleaned.nr.cds" ]; then
             mv $output_dir/transcripts.cleaned.nr.cds '$output_cleaned_nr_cds'
         fi
-        && if [ -f $output_dir/transcripts.cleaned.nr.pep ]; then
+        && if [ -f "$output_dir/transcripts.cleaned.nr.pep" ]; then
             mv $output_dir/transcripts.cleaned.nr.pep '$output_cleaned_nr_pep'
         fi
     #end if