# HG changeset patch
# User greg
# Date 1489688077 14400
# Node ID 0d680d17278ce0803d6fdc446d56970ddf4afcdf
# Parent  443c8e1fd8aa17d0c2d4274b87fc4cc3c866e4e9
Uploaded

diff -r 443c8e1fd8aa -r 0d680d17278c assembly_post_processor.xml
--- a/assembly_post_processor.xml	Thu Mar 16 14:04:20 2017 -0400
+++ b/assembly_post_processor.xml	Thu Mar 16 14:14:37 2017 -0400
@@ -211,9 +211,19 @@
             pages = {205-211},}
         </citation>
         <citation type="bibtex">
+            @article{Katoh2013,
+            journal = {Molecular biology and evolution},
+            author = {7. Katoh K, Standley DM},
+            title = {MAFFT multiple sequence alignment software version 7: improvements in performance and usability},
+            year = {2013},
+            volume = {30},
+            number = {4},
+            pages = {772-780},}
+        </citation>
+        <citation type="bibtex">
             @article{Sasidharan2012,
             journal = {Nucleic Acids Research},
-            author = {7. Sasidharan R, Nepusz T, Swarbreck D, Huala E, Paccanaro A},
+            author = {8. Sasidharan R, Nepusz T, Swarbreck D, Huala E, Paccanaro A},
             title = {GFam: a platform for automatic annotation of gene families},
             year = {2012},
             pages = {gks631},}
@@ -221,7 +231,7 @@
         <citation type="bibtex">
             @article{Li2003,
             journal = {Genome Research}
-            author = {8. Li L, Stoeckert CJ, Roos DS},
+            author = {9. Li L, Stoeckert CJ, Roos DS},
             title = {OrthoMCL: identification of ortholog groups for eukaryotic genomes},
             year = {2003},
             volume = {13},
@@ -231,7 +241,7 @@
         <citation type="bibtex">
             @article{Emms2015,
             journal = {Genome Biology}
-            author = {9. Emms DM, Kelly S},
+            author = {10. Emms DM, Kelly S},
             title = {OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy},
             year = {2015},
             volume = {16},
@@ -241,7 +251,7 @@
         <citation type="bibtex">
             @article{Capella-Gutierrez2009,
             journal = {Bioinformatics,},
-            author = {10. Capella-Gutierrez S, Silla-Martínez JM, Gabaldón T},
+            author = {11. Capella-Gutierrez S, Silla-Martínez JM, Gabaldón T},
             title = {trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses},
             year = {2009},
             volume = {25},
@@ -251,7 +261,7 @@
         <citation type="bibtex">
             @article{Gremme2013,
             journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics},
-            author = {11. Gremme G, Steinbiss S, Kurtz S},
+            author = {12. Gremme G, Steinbiss S, Kurtz S},
             title = {GenomeTools: a comprehensive software library for efficient processing of structured genome annotations},
             year = {2013},
             volume = {10},
@@ -261,7 +271,7 @@
         <citation type="bibtex">
             @article{None,
             journal = {GitHub repository},
-            author = {12. None},
+            author = {13. None},
             title = {HMMER 3.1+ hmmscan search sequence(s) against a profile database},
             year = {2013},
             url = {http://hmmer.org},}