Mercurial > repos > greg > assembly_post_processor
comparison assembly_post_processor.xml @ 109:c69c1a21ce0e draft
Uploaded
author | greg |
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date | Fri, 08 Dec 2017 11:13:45 -0500 |
parents | 0bc8487c0e2e |
children | e2b575f2d346 |
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108:0bc8487c0e2e | 109:c69c1a21ce0e |
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47 #if str($options_type.dereplicate) == 'yes': | 47 #if str($options_type.dereplicate) == 'yes': |
48 cp proc.log '$output_cleaned_nr_cds'; | 48 cp proc.log '$output_cleaned_nr_cds'; |
49 cp proc.log '$output_cleaned_nr_pep'; | 49 cp proc.log '$output_cleaned_nr_pep'; |
50 #end if | 50 #end if |
51 #end if | 51 #end if |
52 exit(1); | |
52 else | 53 else |
53 mv $output_dir/transcripts.cds '$output_cds'; | 54 mv $output_dir/transcripts.cds '$output_cds'; |
54 mv $output_dir/transcripts.pep '$output_pep'; | 55 mv $output_dir/transcripts.pep '$output_pep'; |
55 mv $output_dir/transcripts.cleaned.cds '$output_cleaned_cds'; | 56 mv $output_dir/transcripts.cleaned.cds '$output_cleaned_cds'; |
56 mv $output_dir/transcripts.cleaned.pep '$output_cleaned_pep'; | 57 mv $output_dir/transcripts.cleaned.pep '$output_cleaned_pep'; |