Mercurial > repos > greg > assembly_post_processor
comparison assembly_post_processor.xml @ 12:622603f41432 draft
Uploaded
author | greg |
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date | Tue, 31 Jan 2017 13:46:34 -0500 |
parents | ef522c398ad4 |
children | 521d09ac701a |
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11:ef522c398ad4 | 12:622603f41432 |
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20 #if str($prediction_method_cond.prediction_method) == 'estscan': | 20 #if str($prediction_method_cond.prediction_method) == 'estscan': |
21 --score_matrices '$score_matrices' | 21 --score_matrices '$score_matrices' |
22 #end if | 22 #end if |
23 #if str($options_type.options_type_selector) == 'advanced': | 23 #if str($options_type.options_type_selector) == 'advanced': |
24 #if str($options_type.target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes': | 24 #if str($options_type.target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes': |
25 #set scaffold_path = $options_type.target_gene_family_assembly_cond.scaffold.path | 25 #set scaffold_path = $options_type.target_gene_family_assembly_cond.scaffold['path'] |
26 #set scaffold_dir = $os.path.split($scaffold_path)[0] | 26 #set scaffold_dir = $os.path.split($scaffold_path)[0] |
27 #set scaffold = $os.path.split($scaffold_path)[1] | 27 #set scaffold = $os.path.split($scaffold_path)[1] |
28 --gene_family_search '$options_type.target_gene_family_assembly_cond.orthogroups' | 28 --gene_family_search '$options_type.target_gene_family_assembly_cond.orthogroups' |
29 --scaffold_dir $scaffold_dir | 29 --scaffold_dir $scaffold_dir |
30 --scaffold $scaffold | 30 --scaffold $scaffold |