Mercurial > repos > greg > assembly_post_processor
comparison assembly_post_processor.xml @ 61:5fb9c4fc7c00 draft
Uploaded
| author | greg |
|---|---|
| date | Mon, 22 May 2017 11:40:12 -0400 |
| parents | 3d2aff5a0c07 |
| children | 9eabe9e58fb5 |
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| 60:f7a999b3b19c | 61:5fb9c4fc7c00 |
|---|---|
| 83 <param name="min_length" type="integer" value="200" label="Minimum sequence length"/> | 83 <param name="min_length" type="integer" value="200" label="Minimum sequence length"/> |
| 84 </when> | 84 </when> |
| 85 </conditional> | 85 </conditional> |
| 86 </inputs> | 86 </inputs> |
| 87 <outputs> | 87 <outputs> |
| 88 <collection name="transcripts" type="list"> | |
| 89 <discover_datasets pattern="__name__" directory="assemblyPostProcessing_dir" visible="true" ext="fasta" /> | |
| 90 </collection> | |
| 88 <data name="output_pttgf" format="pttgf" label="${tool.name} (targeted gene families) on ${on_string}"> | 91 <data name="output_pttgf" format="pttgf" label="${tool.name} (targeted gene families) on ${on_string}"> |
| 89 <filter>options_type['options_type_selector'] == 'advanced' and options_type['target_gene_family_assembly_cond']['target_gene_family_assembly'] == 'yes'</filter> | 92 <filter>options_type['options_type_selector'] == 'advanced' and options_type['target_gene_family_assembly_cond']['target_gene_family_assembly'] == 'yes'</filter> |
| 90 </data> | 93 </data> |
| 91 <collection name="transcripts" type="list"> | |
| 92 <discover_datasets pattern="__name__" directory="assemblyPostProcessing_dir" visible="true" ext="fasta" /> | |
| 93 </collection> | |
| 94 </outputs> | 94 </outputs> |
| 95 <tests> | 95 <tests> |
| 96 <test> | 96 <test> |
| 97 <param name="input" value="assembly.fasta" ftype="fasta" /> | 97 <param name="input" value="assembly.fasta" ftype="fasta" /> |
| 98 <param name="prediction_method" value="transdecoder" /> | 98 <param name="prediction_method" value="transdecoder" /> |