Mercurial > repos > greg > assembly_post_processor
comparison assembly_post_processor.xml @ 48:564163c7afd8 draft
Uploaded
| author | greg |
|---|---|
| date | Fri, 05 May 2017 09:30:26 -0400 |
| parents | 3227f0f39800 |
| children | 5c221f721b95 |
comparison
equal
deleted
inserted
replaced
| 47:3227f0f39800 | 48:564163c7afd8 |
|---|---|
| 2 <description>post-processes de novo transcriptome assembly</description> | 2 <description>post-processes de novo transcriptome assembly</description> |
| 3 <macros> | 3 <macros> |
| 4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
| 5 </macros> | 5 </macros> |
| 6 <expand macro="requirements_assembly_post_processor" /> | 6 <expand macro="requirements_assembly_post_processor" /> |
| 7 <expand macro="stdio" /> | 7 <command detect_errors="exit_code"> |
| 8 <command> | |
| 9 <![CDATA[ | 8 <![CDATA[ |
| 10 python $__tool_directory__/assembly_post_processor.py | 9 python $__tool_directory__/assembly_post_processor.py |
| 11 --transcripts '$input' | 10 --transcripts '$input' |
| 12 --prediction_method $prediction_method_cond.prediction_method | 11 --prediction_method $prediction_method_cond.prediction_method |
| 13 #if str($prediction_method_cond.prediction_method) == 'estscan': | 12 #if str($prediction_method_cond.prediction_method) == 'estscan': |