Mercurial > repos > greg > assembly_post_processor
comparison assembly_post_processor.xml @ 48:564163c7afd8 draft
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author | greg |
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date | Fri, 05 May 2017 09:30:26 -0400 |
parents | 3227f0f39800 |
children | 5c221f721b95 |
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47:3227f0f39800 | 48:564163c7afd8 |
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2 <description>post-processes de novo transcriptome assembly</description> | 2 <description>post-processes de novo transcriptome assembly</description> |
3 <macros> | 3 <macros> |
4 <import>macros.xml</import> | 4 <import>macros.xml</import> |
5 </macros> | 5 </macros> |
6 <expand macro="requirements_assembly_post_processor" /> | 6 <expand macro="requirements_assembly_post_processor" /> |
7 <expand macro="stdio" /> | 7 <command detect_errors="exit_code"> |
8 <command> | |
9 <![CDATA[ | 8 <![CDATA[ |
10 python $__tool_directory__/assembly_post_processor.py | 9 python $__tool_directory__/assembly_post_processor.py |
11 --transcripts '$input' | 10 --transcripts '$input' |
12 --prediction_method $prediction_method_cond.prediction_method | 11 --prediction_method $prediction_method_cond.prediction_method |
13 #if str($prediction_method_cond.prediction_method) == 'estscan': | 12 #if str($prediction_method_cond.prediction_method) == 'estscan': |