Mercurial > repos > greg > assembly_post_processor

comparison assembly_post_processor.xml @ 92:55024e4d84d4 draft

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Uploaded
author greg
date Thu, 26 Oct 2017 09:22:59 -0400
parents a9571ff827b4
children c58892e1a388
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91:a9571ff827b4 92:55024e4d84d4
19 #if str($target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes': 19 #if str($target_gene_family_assembly_cond.target_gene_family_assembly) == 'yes':
20 --gene_family_search '$target_gene_family_assembly_cond.orthogroups' 20 --gene_family_search '$target_gene_family_assembly_cond.orthogroups'
21 --scaffold '$target_gene_family_assembly_cond.scaffold.fields.path' 21 --scaffold '$target_gene_family_assembly_cond.scaffold.fields.path'
22 --method '$target_gene_family_assembly_cond.method' 22 --method '$target_gene_family_assembly_cond.method'
23 --gap_trimming $target_gene_family_assembly_cond.gap_trimming 23 --gap_trimming $target_gene_family_assembly_cond.gap_trimming
24 #if $target_gene_family_assembly_cond.min_coverage > 0: 24 #if str($target_gene_family_assembly_cond.min_coverage) != '0.0':
25 --min_coverage $target_gene_family_assembly_cond.min_coverage 25 --min_coverage $target_gene_family_assembly_cond.min_coverage
26 #end if 26 #end if
27 #end if 27 #end if
28 #if str($options_type.strand_specific) == 'yes': 28 #if str($options_type.strand_specific) == 'yes':
29 --strand_specific true 29 --strand_specific true