Mercurial > repos > greg > assembly_post_processor

comparison test-data/transcripts.pep @ 7:4d82da0ca014 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author greg
date Mon, 30 Jan 2017 11:03:42 -0500
parents cecea7fdccf8
children cc4dba9f6ecd
comparison
equal deleted inserted replaced
6:bf355f832557 7:4d82da0ca014
1 >contig_2|m.1 contig_2|g.1 type:5prime_partial len:170 gc:universal contig_2:2-511(+) 1 >contig_1|m.1 contig_1|g.1 type:internal len:115 gc:universal contig_1:344-3(-)
2 KKLYGDKEDILVPDIFWDYTSGKVLTMEWVEGVKLNEQDAVESQGLSVLDLVNTGIQCSLRQLLEYGYFHADPHPGNLLATPDGKLAFLDFGMMSETPEQARSAIIGHVVHMVN
3 >contig_2|m.2 contig_2|g.2 type:5prime_partial len:170 gc:universal contig_2:2-511(+)
2 LSKVPIPSNNIYAINDKKSPEDAADDYENRLKELVSEKIIPVSTISGFPKFDLMLLGMGPDGHVASLFPSHMQRYEKEKWVTFITDSPKPPPSRITFTFPMINSASEIAMVVTGADLAGTTKIALGTTGNVKPGETPLPCTEVSAEGEVTWFLDKDAASQLLNYVRFDD* 4 LSKVPIPSNNIYAINDKKSPEDAADDYENRLKELVSEKIIPVSTISGFPKFDLMLLGMGPDGHVASLFPSHMQRYEKEKWVTFITDSPKPPPSRITFTFPMINSASEIAMVVTGADLAGTTKIALGTTGNVKPGETPLPCTEVSAEGEVTWFLDKDAASQLLNYVRFDD*
3 >contig_9|m.2 contig_9|g.2 type:internal len:132 gc:universal contig_9:2-394(+) 5 >contig_3|m.3 contig_3|g.3 type:5prime_partial len:126 gc:universal contig_3:463-86(-)
6 VDEGVVVAGLSEQEKASVSEILTTARAHSETIENLKRDHSQQVSCIEQHTNDTFRQKYMDYEPTGSTPVRSEPDIPSKGTIESLRAMPIDALEEEFRENHSYESAVTGKELMPSVTTRAPFSQIN*
7 >contig_9|m.4 contig_9|g.4 type:internal len:132 gc:universal contig_9:2-394(+)
4 LRLKADEEAQCLNQMQRIIFDEIMEHVELEKGGFYFVYRPGGNGKTLWLAIISKLRSEGRIVLAVASSGIALLLVEGGRTAHSRFKIPIDVNEYNNCEIKQNIYLAELICHTNLVIWDEAPMTQYFVFEAV 8 LRLKADEEAQCLNQMQRIIFDEIMEHVELEKGGFYFVYRPGGNGKTLWLAIISKLRSEGRIVLAVASSGIALLLVEGGRTAHSRFKIPIDVNEYNNCEIKQNIYLAELICHTNLVIWDEAPMTQYFVFEAV
9 >contig_11|m.5 contig_11|g.5 type:5prime_partial len:108 gc:universal contig_11:2-325(+)
10 IYGKGIQNMRTLWGGVAPESPVVVVGGGVTPESPVVGGIVLGSPAVLLKSDLLQALPPRLLKSALFQNLPSPLLKSGLLHDIPSELLRISRCCCCSRCCSRNSRCGY*
11 >contig_11|m.6 contig_11|g.6 type:5prime_partial len:100 gc:universal contig_11:443-144(-)
12 AAKVTVAPGSRVAAAGSGVASESPATAEAGVAPGSPAVDFNSHSGSFWSNTDCSSNNGRFGATPTGYHGATPTSTVATGDFGTTPTSGAAVGELGVNPT*
13 >contig_18|m.7 contig_18|g.7 type:internal len:143 gc:universal contig_18:426-1(-)
14 TEVRRWNKQEDWGRKTWKEAKESTLPKIVGEGIYGVGPILAALSSGRRELYALYVQEGLDLSSNSKKKDKKRFERVLKMVEKIGLSKKEVSKHDLNMVVDNRPHQGLLLDASALEMVSIKELDPVSIDGEKCPLWLALDEVT
15 >contig_20|m.8 contig_20|g.8 type:internal len:104 gc:universal contig_20:1-309(+)
16 GLRIDAHGYALQDWQRDLFQLDLVLHDEPSPRTRSILLLPADIVHADACHVDALPHYWIRFAYTVAGHGSRSYPYPCAGHLHWFRHSYPLHVGLVSLDQLLGS
17 >contig_20|m.9 contig_20|g.9 type:internal len:103 gc:universal contig_20:2-307(+)
18 AYASMLTDMPYKIGNAICFNLILYFMTNLRREPGAFFFFLLISFTLTLVMSMLFRTIGSVSRTLSQAMAPAAILILALVIYTGFVIPTRYMLGWSRWINYLD
19 >contig_20|m.10 contig_20|g.10 type:internal len:103 gc:universal contig_20:307-2(-)
20 IQVVDPTRPAQHVAGRNDETSVNDQRKDKDSCGSHGLRQCTRNGSNSAEEHRHDKRQRERYQQEEEECSWFAAKVRHEVQDQVETDRVANLVGHIREHRCVS
21 >contig_21|m.11 contig_21|g.11 type:5prime_partial len:168 gc:universal contig_21:519-16(-)
22 VSIVNQEPVLFSVSIGENIAYGLPDDYVSKVDVIKAAKAANAHEFIIALPQGYDTLVGERGGLLSGGQRQRVAIARALLKNAPILILDEATSALDAVSERLVQDALNRLMKGRTTLVIAHRLSTVQNADQIALCSDGKISELGTHSELLEQKGLYASLVGTQRLAFE*
23 >contig_24|m.12 contig_24|g.12 type:internal len:111 gc:universal contig_24:331-2(-)
24 KTRELEIEQILLKSKDLESELESKGSMFIKETEALVAENSKLSQELGAFKSELNDIQMKLNVVSSEKDGTVEELTSARKEIEELTQKLASEGQKLQSQISSIMEENNLLN