Mercurial > repos > greg > assembly_post_processor
comparison assembly_post_processor.xml @ 30:0d680d17278c draft
Uploaded
| author | greg |
|---|---|
| date | Thu, 16 Mar 2017 14:14:37 -0400 |
| parents | 443c8e1fd8aa |
| children | 0fad708a9693 |
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| 29:443c8e1fd8aa | 30:0d680d17278c |
|---|---|
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| 210 number = {1}, | 210 number = {1}, |
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| 212 </citation> | 212 </citation> |
| 213 <citation type="bibtex"> | 213 <citation type="bibtex"> |
| 214 @article{Katoh2013, | |
| 215 journal = {Molecular biology and evolution}, | |
| 216 author = {7. Katoh K, Standley DM}, | |
| 217 title = {MAFFT multiple sequence alignment software version 7: improvements in performance and usability}, | |
| 218 year = {2013}, | |
| 219 volume = {30}, | |
| 220 number = {4}, | |
| 221 pages = {772-780},} | |
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| 223 <citation type="bibtex"> | |
| 214 @article{Sasidharan2012, | 224 @article{Sasidharan2012, |
| 215 journal = {Nucleic Acids Research}, | 225 journal = {Nucleic Acids Research}, |
| 216 author = {7. Sasidharan R, Nepusz T, Swarbreck D, Huala E, Paccanaro A}, | 226 author = {8. Sasidharan R, Nepusz T, Swarbreck D, Huala E, Paccanaro A}, |
| 217 title = {GFam: a platform for automatic annotation of gene families}, | 227 title = {GFam: a platform for automatic annotation of gene families}, |
| 218 year = {2012}, | 228 year = {2012}, |
| 219 pages = {gks631},} | 229 pages = {gks631},} |
| 220 </citation> | 230 </citation> |
| 221 <citation type="bibtex"> | 231 <citation type="bibtex"> |
| 222 @article{Li2003, | 232 @article{Li2003, |
| 223 journal = {Genome Research} | 233 journal = {Genome Research} |
| 224 author = {8. Li L, Stoeckert CJ, Roos DS}, | 234 author = {9. Li L, Stoeckert CJ, Roos DS}, |
| 225 title = {OrthoMCL: identification of ortholog groups for eukaryotic genomes}, | 235 title = {OrthoMCL: identification of ortholog groups for eukaryotic genomes}, |
| 226 year = {2003}, | 236 year = {2003}, |
| 227 volume = {13}, | 237 volume = {13}, |
| 228 number = {9}, | 238 number = {9}, |
| 229 pages = {2178-2189},} | 239 pages = {2178-2189},} |
| 230 </citation> | 240 </citation> |
| 231 <citation type="bibtex"> | 241 <citation type="bibtex"> |
| 232 @article{Emms2015, | 242 @article{Emms2015, |
| 233 journal = {Genome Biology} | 243 journal = {Genome Biology} |
| 234 author = {9. Emms DM, Kelly S}, | 244 author = {10. Emms DM, Kelly S}, |
| 235 title = {OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy}, | 245 title = {OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy}, |
| 236 year = {2015}, | 246 year = {2015}, |
| 237 volume = {16}, | 247 volume = {16}, |
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| 240 </citation> | 250 </citation> |
| 241 <citation type="bibtex"> | 251 <citation type="bibtex"> |
| 242 @article{Capella-Gutierrez2009, | 252 @article{Capella-Gutierrez2009, |
| 243 journal = {Bioinformatics,}, | 253 journal = {Bioinformatics,}, |
| 244 author = {10. Capella-Gutierrez S, Silla-Martínez JM, Gabaldón T}, | 254 author = {11. Capella-Gutierrez S, Silla-Martínez JM, Gabaldón T}, |
| 245 title = {trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses}, | 255 title = {trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses}, |
| 246 year = {2009}, | 256 year = {2009}, |
| 247 volume = {25}, | 257 volume = {25}, |
| 248 number = {15}, | 258 number = {15}, |
| 249 pages = {1972-1973},} | 259 pages = {1972-1973},} |
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| 251 <citation type="bibtex"> | 261 <citation type="bibtex"> |
| 252 @article{Gremme2013, | 262 @article{Gremme2013, |
| 253 journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics}, | 263 journal = {IEEE/ACM Transactions on Computational Biology and Bioinformatics}, |
| 254 author = {11. Gremme G, Steinbiss S, Kurtz S}, | 264 author = {12. Gremme G, Steinbiss S, Kurtz S}, |
| 255 title = {GenomeTools: a comprehensive software library for efficient processing of structured genome annotations}, | 265 title = {GenomeTools: a comprehensive software library for efficient processing of structured genome annotations}, |
| 256 year = {2013}, | 266 year = {2013}, |
| 257 volume = {10}, | 267 volume = {10}, |
| 258 number = {3}, | 268 number = {3}, |
| 259 pages = {645-656},} | 269 pages = {645-656},} |
| 260 </citation> | 270 </citation> |
| 261 <citation type="bibtex"> | 271 <citation type="bibtex"> |
| 262 @article{None, | 272 @article{None, |
| 263 journal = {GitHub repository}, | 273 journal = {GitHub repository}, |
| 264 author = {12. None}, | 274 author = {13. None}, |
| 265 title = {HMMER 3.1+ hmmscan search sequence(s) against a profile database}, | 275 title = {HMMER 3.1+ hmmscan search sequence(s) against a profile database}, |
| 266 year = {2013}, | 276 year = {2013}, |
| 267 url = {http://hmmer.org},} | 277 url = {http://hmmer.org},} |
| 268 </citation> | 278 </citation> |
| 269 </citations> | 279 </citations> |