# HG changeset patch
# User greg
# Date 1539282031 14400
# Node ID 192da25388ec8ff4d577d01f206cffe2cc6219e8
# Parent  4dc497887a5c178280d99170153ffe2409c360d2
Uploaded

diff -r 4dc497887a5c -r 192da25388ec affy2vcf.xml
--- a/affy2vcf.xml	Fri Oct 05 11:09:55 2018 -0400
+++ b/affy2vcf.xml	Thu Oct 11 14:20:31 2018 -0400
@@ -5,8 +5,9 @@
     </requirements>
     <command detect_errors="exit_code"><![CDATA[
 #set text_outputs_dir = 'text_outputs'
+export BCFTOOLS_PLUGINS=\$(dirname `which bcftools`)/../libexec/bcftools &&
 mkdir $text_outputs_dir &&
-bcftools +affy2vcf.so
+bcftools +$BCFTOOLS_PLUGINS/affy2vcf.so
 #if str($reference_genome_source_cond.reference_genome_source) == "history":
     --fasta_ref '$reference_genome_source_cond.history_item'
 #else: