+Summary of DimontPredictor results

# HG changeset patch # User grau # Date 1383863686 18000 # Node ID a38716ced315f44fc8e755beae9e09fb084196c1 # Parent c70abbb0b00107935da505ee721703545392e84b Uploaded diff -r c70abbb0b001 -r a38716ced315 DimontPredictorWeb.xml --- a/DimontPredictorWeb.xml Thu Nov 07 16:59:50 2013 -0500 +++ b/DimontPredictorWeb.xml Thu Nov 07 17:34:46 2013 -0500 @@ -63,6 +63,7 @@ + diff -r c70abbb0b001 -r a38716ced315 test-data/.DS_Store Binary file test-data/.DS_Store has changed diff -r c70abbb0b001 -r a38716ced315 test-data/TestPred/Motif0.png Binary file test-data/TestPred/Motif0.png has changed diff -r c70abbb0b001 -r a38716ced315 test-data/TestPred/Motif_(rc)1.png Binary file test-data/TestPred/Motif_(rc)1.png has changed diff -r c70abbb0b001 -r a38716ced315 test-data/TestPred/TestPred_html.html --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/TestPred/TestPred_html.html Thu Nov 07 17:34:46 2013 -0500 @@ -0,0 +1,36 @@ + + + +Summary of DimontPredictor results + +

+Summary of DimontPredictor results +

+Motif

+Sequence logo of the motif

+Motif (rc)

+Sequence logo of the reverse complement of the motif

+Description of columns of binding site output (see history)

Column	Description
Sequence index	The index of the sequence
Position	The start position of predicted binding site (BS) within the sequence
Strand	The strand of the predicted BS
p-value	The p-value of the predicted BS
Binding site	The binding site as in the sequence
Adjusted binding site	The binding site in predicted orientation
Sequence annotation	The annotation of the original sequence

+You can download the predictions as tab-separated file from the history.

+Protocol

+
++++++++++++++++++++++++++++++++++++++++++++++

Motif model

motif probability: 0.906

Probabilities at position 0:
A C G T
0.144 0.087 0.725 0.044

A	C	G	T
0.144	0.087	0.725	0.044

Probabilities at position 1:
A C G T
0.040 0.045 0.868 0.047

A	C	G	T
0.040	0.045	0.868	0.047

Probabilities at position 2:
A C G T
0.686 0.188 0.061 0.065

A	C	G	T
0.686	0.188	0.061	0.065

Probabilities at position 3:
A C G T
0.048 0.120 0.052 0.781

A	C	G	T
0.048	0.120	0.052	0.781

Probabilities at position 4:
A C G T
0.055 0.130 0.040 0.776

A	C	G	T
0.055	0.130	0.040	0.776

Probabilities at position 5:
A C G T
0.711 0.067 0.057 0.165

A	C	G	T
0.711	0.067	0.057	0.165

Probabilities at position 6:
A C G T
0.319 0.080 0.424 0.177

A	C	G	T
0.319	0.080	0.424	0.177

++++++++++++++++++++++++++++++++++++++++++++++

Predicting...
Predicted 1897 binding sites.

+
+The protocol of this DimontPredictor run
+
+ +