Mercurial > repos > grau > dimont
diff DimontWeb.xml @ 6:6bc47a4dca07 draft
Uploaded
| author | grau |
|---|---|
| date | Wed, 06 Nov 2013 17:09:17 -0500 |
| parents | 23b912162e3b |
| children | 85fd336b5b45 |
line wrap: on
line diff
--- a/DimontWeb.xml Wed Nov 06 11:54:11 2013 -0500 +++ b/DimontWeb.xml Wed Nov 06 17:09:17 2013 -0500 @@ -86,6 +86,23 @@ <data format="html" name="summary" label="#if str($Dimont_jobname) == '' then $tool.name + ' on ' + $on_string else $Dimont_jobname#"> </data> </outputs> +<tests> + <test> + <param name="Dimont_jobname" value="Test" /> + <param name="Dimont_ps_Input_sequences" value="dimont_test.fasta" /> + <param name="Dimont_ps_Position_tag" value="peakSummit" /> + <param name="Dimont_ps_Value_tag" value="maxT" /> + <param name="Dimont_ps_Standard_deviation" value="75.0" /> + <param name="Dimont_ps_Weighting_factor" value="0.2" /> + <param name="Dimont_ps_Starts" value="20" /> + <param name="Dimont_ps_Initial_motif_width" value="15" /> + <param name="Dimont_ps_Markov_order_of_motif_model" value="0" /> + <param name="Dimont_ps_Markov_order_of_background_model" value="-1" /> + <param name="Dimont_ps_Equivalent_sample_size" value="4.0" /> + <param name="Dimont_ps_Delete_BSs_from_profile" value="True" /> + <output name="summary" file="Test/Test_html.html" /> + </test> +</tests> <help> **Dimont** is a universal tool for de-novo motif discovery. Dimont has successfully been applied to ChIP-seq, ChIP-exo and protein-binding microarray (PBM) data.