comparison DimontDataExtractor.xml @ 17:2ea4f3401930 draft

Uploaded

16:afa37a53c305

<tool id="DimontDataExtractor" name="Dimont Data Extractor" version="0.1">
<description>Extracts genomic regions specified in a BED-like file format in the annotated FastA format as required by Dimont</description>
<command interpreter="perl">extract_data_single_galaxy.pl $genomefa $regions $chromcol $startcol $seccol $seccoord $width $statcol $extracted</command>
<inputs>
	<param type="data" format="bed,gtf,txt,tabular" name="regions" label="Genomic regions" value="" optional="false" help="The genomic regions to be extracted in a BED-like file format, e.g., BED, GTF, narrowPeak." />
	<param type="data" format="fasta" name="genomefa" label="Genome sequence" value="" optional="false" help="The input genome to which the genomic regions refer." />
	<param type="data_column" data_ref="regions" force_select="true" name="chromcol" label="Chromosome column" value="1" optional="false" help="The column of the regions file, which contains the chromosome information." />

17:2ea4f3401930

<tool id="DimontDataExtractor" name="Dimont Data Extractor" version="0.1">
<description>prepares data in the format required by Dimont</description>
<command interpreter="perl">extract_data_single_galaxy.pl $genomefa $regions $chromcol $startcol $seccol $seccoord $width $statcol $extracted</command>
<inputs>
	<param type="data" format="bed,gtf,txt,tabular" name="regions" label="Genomic regions" value="" optional="false" help="The genomic regions to be extracted in a BED-like file format, e.g., BED, GTF, narrowPeak." />
	<param type="data" format="fasta" name="genomefa" label="Genome sequence" value="" optional="false" help="The input genome to which the genomic regions refer." />
	<param type="data_column" data_ref="regions" force_select="true" name="chromcol" label="Chromosome column" value="1" optional="false" help="The column of the regions file, which contains the chromosome information." />