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1 <html>
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2 <head>
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3 <title>
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4 Summary of DimontPredictor results</title>
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5 <style type="text/css">body{font-family:sans-serif;font-size:10pt}
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6 table{font-size:10pt;border-spacing:0px}
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7 th{font-weight:bold}
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8 div.head{font-size:15px;line-height:24px;padding:5px 10px;background:#ebd9b2;border-bottom:solid #d8b365 1px;font-weight:bold}
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9 div.comment{color:grey}
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10 h2{text-align:center}</style></head>
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11 <h2><title>
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12 Summary of DimontPredictor results</title>
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13 </h2><body>
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14 <div class="head">
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15 Motif</div>
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16 <br /><img src="Motif0.png" alt="Motif" width="749" height="529"/><div class="comment">
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17 Sequence logo of the motif</div>
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18 <br /><div class="head">
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19 Motif (rc)</div>
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20 <br /><img src="Motif_(rc)1.png" alt="Motif (rc)" width="749" height="529"/><div class="comment">
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21 Sequence logo of the reverse complement of the motif</div>
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22 <br /><div class="head">
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23 Description of columns of binding site output (see history)</div>
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24 <br /><div>
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25 <table border="1"><tr><th>Column</th><th>Description</th></tr><tr><td>Sequence index</td><td>The index of the sequence</td></tr><tr><td>Position</td><td>The start position of predicted binding site (BS) within the sequence</td></tr><tr><td>Strand</td><td>The strand of the predicted BS</td></tr><tr><td>p-value</td><td>The p-value of the predicted BS</td></tr><tr><td>Binding site</td><td>The binding site as in the sequence</td></tr><tr><td>Adjusted binding site</td><td>The binding site in predicted orientation</td></tr><tr><td>Sequence annotation</td><td>The annotation of the original sequence</td></tr></table></div>
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26 <div class="comment">
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27 You can download the predictions as tab-separated file from the history.</div>
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28 <br /><div class="head">
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29 Protocol</div>
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30 <br /><div>
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31 <br />++++++++++++++++++++++++++++++++++++++++++++++<br /><br /><strong>Motif model</strong><br /><p><strong>motif probability:</strong> 0.906</p><p><strong>Probabilities at position 0:<strong><br/><table border="1"><tr><th>A</th><th>C</th><th>G</th><th>T</th></tr><tr><td>0.144</td><td>0.087</td><td>0.725</td><td>0.044</td></tr></table></p><p><strong>Probabilities at position 1:<strong><br/><table border="1"><tr><th>A</th><th>C</th><th>G</th><th>T</th></tr><tr><td>0.040</td><td>0.045</td><td>0.868</td><td>0.047</td></tr></table></p><p><strong>Probabilities at position 2:<strong><br/><table border="1"><tr><th>A</th><th>C</th><th>G</th><th>T</th></tr><tr><td>0.686</td><td>0.188</td><td>0.061</td><td>0.065</td></tr></table></p><p><strong>Probabilities at position 3:<strong><br/><table border="1"><tr><th>A</th><th>C</th><th>G</th><th>T</th></tr><tr><td>0.048</td><td>0.120</td><td>0.052</td><td>0.781</td></tr></table></p><p><strong>Probabilities at position 4:<strong><br/><table border="1"><tr><th>A</th><th>C</th><th>G</th><th>T</th></tr><tr><td>0.055</td><td>0.130</td><td>0.040</td><td>0.776</td></tr></table></p><p><strong>Probabilities at position 5:<strong><br/><table border="1"><tr><th>A</th><th>C</th><th>G</th><th>T</th></tr><tr><td>0.711</td><td>0.067</td><td>0.057</td><td>0.165</td></tr></table></p><p><strong>Probabilities at position 6:<strong><br/><table border="1"><tr><th>A</th><th>C</th><th>G</th><th>T</th></tr><tr><td>0.319</td><td>0.080</td><td>0.424</td><td>0.177</td></tr></table></p><br />++++++++++++++++++++++++++++++++++++++++++++++<br /><br /><strong>Predicting...</strong><br />Predicted 1897 binding sites.</div>
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32 <div class="comment">
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33 The protocol of this DimontPredictor run</div>
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34 <br /></body>
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35 </html>
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