Mercurial > repos > glogobyte > viztool
comparison viz_graphs.py @ 27:a6f94856a282 draft
Uploaded
| author | glogobyte |
|---|---|
| date | Sun, 05 Dec 2021 13:29:56 +0000 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 26:6528239cedf0 | 27:a6f94856a282 |
|---|---|
| 1 # Import FPDF class | |
| 2 from fpdf import FPDF | |
| 3 | |
| 4 # Import glob module to find all the files matching a pattern | |
| 5 import glob | |
| 6 | |
| 7 #############################################################################################################################################################3 | |
| 8 | |
| 9 def pdf_after_DE(analysis,top,font_path,iso_star_fl,non_star_fl): | |
| 10 | |
| 11 # Image extensions | |
| 12 if analysis=="2": | |
| 13 image_extensions = ("tem.png","a2.png","non.png") | |
| 14 else: | |
| 15 image_extensions = ("tem.png","a2.png") | |
| 16 | |
| 17 # This list will hold the images file names | |
| 18 images = [] | |
| 19 | |
| 20 # Build the image list by merging the glob results (a list of files) | |
| 21 # for each extension. We are taking images from current folder. | |
| 22 for extension in image_extensions: | |
| 23 images.extend(glob.glob(extension)) | |
| 24 | |
| 25 # Create instance of FPDF class | |
| 26 pdf = FPDF('P', 'in', 'letter') | |
| 27 pdf.add_font('uni-arial', '', font_path+"/arial-unicode-ms.ttf", uni=True) | |
| 28 # Add new page. Without this you cannot create the document. | |
| 29 pdf.add_page() | |
| 30 # Set font to Arial, 'B'old, 16 pts | |
| 31 pdf.set_font('Arial', 'B', 16.0) | |
| 32 | |
| 33 # Page header | |
| 34 pdf.cell(pdf.w-0.5, 0.5, 'Differential expression of miRNAs and isomiRs',align='C') | |
| 35 #pdf.ln(0.25) | |
| 36 | |
| 37 pdf.ln(0.7) | |
| 38 pdf.set_font('Arial','B', 12.0) | |
| 39 if "tem.png" in images: | |
| 40 pdf.cell(pdf.w-0.5, 0.5, 'Top '+top+' differentially expressed miRNA and templated isoforms',align='C') | |
| 41 # Smaller font for image captions | |
| 42 pdf.set_font('Arial', '', 10.0) | |
| 43 # Image caption | |
| 44 pdf.ln(0.4) | |
| 45 pdf.image(images[images.index("tem.png")],x=0.8, w=7, h=8) | |
| 46 pdf.ln(0.3) | |
| 47 if iso_star_fl==1: | |
| 48 pdf.set_font('uni-arial', '', 9.0) | |
| 49 pdf.cell(0.2) | |
| 50 pdf.cell(3.0, 0.0, " ★ IsomiRs potentially generated from multiple loci") | |
| 51 #pdf.set_font('Arial','B', 12.0) | |
| 52 else: | |
| 53 print("WARNING: There aren't miRNAs which fullfiled these criteria" ) | |
| 54 pdf.set_font('Arial','B', 12.0) | |
| 55 if "non.png" in images and analysis=="2": | |
| 56 if "tem.png" in images: pdf.add_page() | |
| 57 pdf.ln(0.7) | |
| 58 pdf.cell(pdf.w-0.5, 0.5, 'Top '+top+' differentially expressed non-templated isomiRs',align='C') | |
| 59 pdf.ln(0.4) | |
| 60 pdf.image(images[images.index("non.png")],x=0.8, w=7, h=8) | |
| 61 pdf.ln(0.3) | |
| 62 if non_star_fl==1: | |
| 63 pdf.set_font('uni-arial', '', 9.0) | |
| 64 pdf.cell(0.2) | |
| 65 pdf.cell(3.0, 0.0, " ★ IsomiRs potentially generated from multiple loci") | |
| 66 | |
| 67 #pdf.image(images[images.index("non.png")],x=0.5, w=7.5, h=6.5) | |
| 68 else: | |
| 69 print("WARNING: There aren't non-template miRNAs which fullfiled these criteria" ) | |
| 70 | |
| 71 pdf.set_font('Arial','B', 12.0) | |
| 72 if "a2.png" in images: | |
| 73 if len(images)>=2: pdf.add_page() | |
| 74 pdf.ln(0.5) | |
| 75 pdf.cell(pdf.w-0.5, 0.5, 'Top differentially expressed miRNAs and isomiRs grouped by arm',align='C') | |
| 76 pdf.ln(0.4) | |
| 77 pdf.image(images[images.index("a2.png")],x=0.8, w=7, h=8) | |
| 78 pdf.ln(0.3) | |
| 79 else: | |
| 80 print("WARNING: There aren't non-template miRNAs which fullfiled these criteria" ) | |
| 81 | |
| 82 | |
| 83 pdf.output('report2.pdf', 'F') | |
| 84 | |
| 85 | |
| 86 |