Mercurial > repos > ggricourt > data_manager_bigg
changeset 15:44119168868c draft default tip
"planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit 7db54c0555a12ecb8b3f756032228c54fe028e0a-dirty"
author | ggricourt |
---|---|
date | Wed, 09 Mar 2022 15:44:01 +0000 |
parents | 8e8a9e51f1d7 |
children | |
files | data_manager/metanetx_chem_prop_fetcher.xml tool-data/bigg_model_sbml.loc.sample tool-data/metanetx_chem_prop.loc.sample tool-data/model_sbml.loc.sample tool_data_table_conf.xml.sample |
diffstat | 5 files changed, 15 insertions(+), 19 deletions(-) [+] |
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--- a/data_manager/metanetx_chem_prop_fetcher.xml Wed Mar 09 15:18:07 2022 +0000 +++ b/data_manager/metanetx_chem_prop_fetcher.xml Wed Mar 09 15:44:01 2022 +0000 @@ -5,25 +5,13 @@ </requirements> <command detect_errors="exit_code"><![CDATA[ python '$__tool_directory__/metanetx_chem_prop_fetcher.py' - #if $input_cond.input_select == "latest" - --version latest - #else - --version '$input_cond.version_id' - #end if + --version '$version_id' --out-file '$out_file' ]]></command> <inputs> - <conditional name="input_cond"> - <param name="input_select" type="select" label="Select a version to download"> - <option value="latest">Download latest</option> - <option value="version">Choose version</option> - </param> - <when value="version"> - <param name="version_id" type="text" label="Version ID to download" value=""> - <validator type="empty_field" message="Version ID is required"/> - </param> - </when> - </conditional> + <param name="version_id" type="text" label="Version ID to download" value=""> + <validator type="empty_field" message="Version ID is required"/> + </param> </inputs> <outputs> <data name="out_file" format="data_manager_json" />
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/bigg_model_sbml.loc.sample Wed Mar 09 15:44:01 2022 +0000 @@ -0,0 +1,3 @@ +## Bigg SBML files +#Value Name Path +#iAF1260 Escherichia coli str. K-12 substr. MG1655 (iAF1260) bigg/model/iAF1260.xml
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool-data/metanetx_chem_prop.loc.sample Wed Mar 09 15:44:01 2022 +0000 @@ -0,0 +1,3 @@ +## MetaNetW chem_prop data +#Value Name InChI +#MNXM01 MNXM01: PMF (H) InChIKey=GPRLSGONYQIRFK-UHFFFAOYSA-N
--- a/tool-data/model_sbml.loc.sample Wed Mar 09 15:18:07 2022 +0000 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,3 +0,0 @@ -## Bigg SBML files -#Value Name Path -#iAF1260 Escherichia coli str. K-12 substr. MG1655 (iAF1260) bigg/model/iAF1260.xml
--- a/tool_data_table_conf.xml.sample Wed Mar 09 15:18:07 2022 +0000 +++ b/tool_data_table_conf.xml.sample Wed Mar 09 15:44:01 2022 +0000 @@ -4,5 +4,10 @@ <columns>value, name, path</columns> <file path="tool-data/bigg_model_sbml.loc" /> </table> + <!-- Location of metanetx chem prop data --> + <table name="metanetx_chem_prop" comment_char="#"> + <columns>value, name, inchi</columns> + <file path="tool-data/metanetx_chem_prop.loc" /> + </table> </tables>