Mercurial > repos > ggricourt > data_manager_bigg

comparison data_manager/bigg_model_sbml_fetcher.py @ 3:2f837e65b33c draft

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"planemo upload for repository https://github.com/brsynth/synbiocad-galaxy-wrappers commit bd6bcc77b43b63c68662b7319375ff3aa79cf9d9"
author ggricourt
date Wed, 23 Feb 2022 16:11:18 +0000
parents 2be543b08426
children 5e6f76507721
comparison
equal deleted inserted replaced
2:2be543b08426 3:2f837e65b33c
93 data_manager_json = {'data_tables': {}} 93 data_manager_json = {'data_tables': {}}
94 file_path = url_download(BASE_URL + '/' + model_id + '.xml', workdir) 94 file_path = url_download(BASE_URL + '/' + model_id + '.xml', workdir)
95 95
96 data_manager_entry = {} 96 data_manager_entry = {}
97 data_manager_entry['value'] = model_id 97 data_manager_entry['value'] = model_id
98 data_manager_entry['name'] = MODELID2ORG.get(model_id, 'undefined') 98 data_manager_entry['name'] = ID2ORG.get(model_id, 'undefined')
99 data_manager_entry['path'] = file_path 99 data_manager_entry['path'] = file_path
100 100
101 data_manager_json['data_tables']['bigg_model_sbml'] = data_manager_entry 101 data_manager_json['data_tables']['bigg_model_sbml'] = data_manager_entry
102 with open(out_file, 'w') as fh: 102 with open(out_file, 'w') as fh:
103 json.dump(data_manager_json, fh, sort_keys=True) 103 json.dump(data_manager_json, fh, sort_keys=True)