Mercurial > repos > gga > tripal_analysis_load_go
changeset 3:23eec63d6712 draft
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit d21999bb3e142fd972a3338b70216989a257d5b1
| author | gga |
|---|---|
| date | Mon, 06 Aug 2018 04:35:32 -0400 |
| parents | 0f34d7ffbf68 |
| children | 2203145997e4 |
| files | analysis_load_go.xml macros.xml |
| diffstat | 2 files changed, 21 insertions(+), 3 deletions(-) [+] |
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--- a/analysis_load_go.xml Thu Jun 21 08:36:02 2018 -0400 +++ b/analysis_load_go.xml Mon Aug 06 04:35:32 2018 -0400 @@ -5,6 +5,7 @@ <import>macros.xml</import> </macros> <expand macro="requirements"/> + <code file="tripal.py"/> <expand macro="stdio"/> <command><![CDATA[ tmp_dir=`mktemp -d -p "@DATA_DIR@"` && chmod a+rx "\${tmp_dir}" @@ -19,9 +20,21 @@ tripaille analysis load_go + --organism_id '${organism}' + @ANALYSIS@ - @MATCHING@ + #if str($matching.query_re): + --re_name '${matching.query_re}' + #end if + + #if $matching.query_uniquename: + --query_matching 'uniquename' + #else + --query_matching 'uniquename' + #end if + + --query_type '$matching.query_type' "\${tmp_dir}/blast2go.gaf" @@ -35,6 +48,11 @@ format="txt" label="Blast2Go results (GAF file)" /> + <param argument="--organism" + type="select" + dynamic_options="list_organisms()" + label="Organism" /> + <expand macro="matching"/> <expand macro="analysis" /> <expand macro="wait_for"/>
--- a/macros.xml Thu Jun 21 08:36:02 2018 -0400 +++ b/macros.xml Mon Aug 06 04:35:32 2018 -0400 @@ -2,7 +2,7 @@ <macros> <xml name="requirements"> <requirements> - <requirement type="package" version="2.0.4">python-tripal</requirement> + <requirement type="package" version="3.0">python-tripal</requirement> <yield/> </requirements> </xml> @@ -15,7 +15,7 @@ </stdio> </xml> - <token name="@WRAPPER_VERSION@">2.0.4</token> + <token name="@WRAPPER_VERSION@">3.0</token> <xml name="citation"> <citations>