Mercurial > repos > gga > tripal_analysis_load_gff3

comparison README.rst @ 1:dbdbf5fea145 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f55bad7dcf56bd9625874cd89f3894aee35d91ef
author gga
date Tue, 19 Sep 2017 12:19:13 -0400
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1 Galaxy-tripal
2 =============
3
4 Galaxy tools to interface with Tripal using pyhon-tripal
5
6 Dependencies
7 ------------
8
9 You will need to install some python modules in the Galaxy virtualenv for these
10 tools to be fully functional:
11
12 .. code:: bash
13
14 . /path/to/galaxy/.venv/bin/activate
15 pip install future tripal
16 deactivate
17
18 Environment
19 -----------
20
21 The following environment variables must be set:
22
23 +--------------------------------+-----------------------------------------------------------+
24 | ENV | Use |
25 +================================+===========================================================+
26 | ``$GALAXY_TRIPAL_URL`` | The URL at which Tripal is accessible, internal to Galaxy |
27 | | and where the tools run. Must be absolute, with FQDN and |
28 | | protocol. |
29 +--------------------------------+-----------------------------------------------------------+
30 | ``$GALAXY_TRIPAL_USER`` | The admin user which Galaxy should use to talk to Tripal. |
31 | | |
32 +--------------------------------+-----------------------------------------------------------+
33 | ``$GALAXY_TRIPAL_PASSWORD`` | The password for the admin user. |
34 | | |
35 | | |
36 +--------------------------------+-----------------------------------------------------------+
37 | ``$GALAXY_TRIPAL_SHARED_DIR`` | Directory shared between Galaxy and Tripal, used to |
38 | | exchange data files. |
39 +--------------------------------+-----------------------------------------------------------+
40
41
42 License
43 -------
44
45 All python scripts, wrappers, and the webapollo.py are licensed under
46 MIT license.