Mercurial > repos > gga > tripal_analysis_get_analyses

annotate analysis_get_analyses.xml @ 7:6dd84962af74 draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit ea279e5b47cf3d5767328d17b0e40e57b0238ea1"
author gga
date Wed, 14 Aug 2019 09:52:24 -0400
parents 68d3383b2fe4
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
1 <?xml version="1.0"?>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
2 <tool id="analysis_get_analyses" profile="16.04" name="Get analyses" version="@WRAPPER_VERSION@.0">
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
3 <description>from Tripal</description>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
4 <macros>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
5 <import>macros.xml</import>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
6 </macros>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
7 <expand macro="requirements">
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
8 <requirement type="package" version="1.5">jq</requirement>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
9 </expand>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
10 <expand macro="stdio"/>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
11 <command><![CDATA[
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
12
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
13 @AUTH@
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
14
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
15 tripaille analysis get_analyses
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
16
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
17 #if $analysis_id:
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
18 --analysis_id "$analysis_id"
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
19 #end if
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
20 #if $name:
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
21 --name "$name"
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
22 #end if
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
23 #if $program:
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
24 --program "$program"
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
25 #end if
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
26 #if $programversion:
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
27 --programversion "$programversion"
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
28 #end if
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
29 #if $algorithm:
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
30 --algorithm "$algorithm"
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
31 #end if
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
32 #if $sourcename:
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
33 --sourcename "$sourcename"
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
34 #end if
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
35 #if $sourceversion:
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
36 --sourceversion "$sourceversion"
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
37 #end if
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
38 #if $sourceuri:
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
39 --sourceuri "$sourceuri"
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
40 #end if
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
41 #if $date_executed:
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
42 --date_executed "$date_executed"
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
43 #end if
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
44
6
68d3383b2fe4 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 35c5eff77b573a66f3611b4906417df9a440c857
gga
parents: 4
diff changeset
45 | jq -S . > '$results'
0
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
46 ]]></command>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
47 <inputs>
4
c5c887aafeb6 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents: 0
diff changeset
48 <param name="analysis_id" label="Analysis Id" argument="analysis_id" type="integer" optional="true" help="An analysis ID" />
c5c887aafeb6 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents: 0
diff changeset
49 <param name="name" label="Name" argument="name" type="text" optional="true" help="analysis name" />
c5c887aafeb6 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents: 0
diff changeset
50 <param name="program" label="Program" argument="program" type="text" optional="true" help="analysis program" />
c5c887aafeb6 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents: 0
diff changeset
51 <param name="programversion" label="Programversion" argument="programversion" type="text" optional="true" help="analysis programversion" />
c5c887aafeb6 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents: 0
diff changeset
52 <param name="algorithm" label="Algorithm" argument="algorithm" type="text" optional="true" help="analysis algorithm" />
c5c887aafeb6 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents: 0
diff changeset
53 <param name="sourcename" label="Sourcename" argument="sourcename" type="text" optional="true" help="analysis sourcename" />
c5c887aafeb6 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents: 0
diff changeset
54 <param name="sourceversion" label="Sourceversion" argument="sourceversion" type="text" optional="true" help="analysis sourceversion" />
c5c887aafeb6 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents: 0
diff changeset
55 <param name="sourceuri" label="Sourceuri" argument="sourceuri" type="text" optional="true" help="analysis sourceuri" />
c5c887aafeb6 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents: 0
diff changeset
56 <param name="date_executed" label="Date Executed" argument="date_executed" type="text" optional="true" help="analysis date_executed (yyyy-mm-dd)" />
0
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
57 </inputs>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
58 <outputs>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
59 <data format="json" name="results" label="Tripal analyses" />
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
60 </outputs>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
61 <tests>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
62 <test expect_failure="true">
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
63 <param name="analysis_id" value="3" />
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
64
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
65 <expand macro="test_result" />
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
66 </test>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
67 </tests>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
68 <help><![CDATA[
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
69 @HELP_OVERVIEW@
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
70
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
71 **Get Analyses**
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
72
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
73 With this tool, you can list analyses from the Tripal/Chado database.
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
74
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
75 @HELP@
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
76 ]]></help>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
77 <expand macro="citation"/>
a0def5a5c1dd planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff changeset
78 </tool>