annotate analysis_get_analyses.xml @ 7:6dd84962af74 draft default tip

"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit ea279e5b47cf3d5767328d17b0e40e57b0238ea1"
author gga
date Wed, 14 Aug 2019 09:52:24 -0400
parents 68d3383b2fe4
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1 <?xml version="1.0"?>
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2 <tool id="analysis_get_analyses" profile="16.04" name="Get analyses" version="@WRAPPER_VERSION@.0">
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3 <description>from Tripal</description>
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4 <macros>
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5 <import>macros.xml</import>
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6 </macros>
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7 <expand macro="requirements">
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8 <requirement type="package" version="1.5">jq</requirement>
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9 </expand>
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10 <expand macro="stdio"/>
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11 <command><![CDATA[
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12
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13 @AUTH@
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14
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15 tripaille analysis get_analyses
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16
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17 #if $analysis_id:
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18 --analysis_id "$analysis_id"
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19 #end if
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20 #if $name:
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21 --name "$name"
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22 #end if
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23 #if $program:
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24 --program "$program"
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25 #end if
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26 #if $programversion:
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27 --programversion "$programversion"
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28 #end if
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29 #if $algorithm:
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30 --algorithm "$algorithm"
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31 #end if
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32 #if $sourcename:
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33 --sourcename "$sourcename"
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34 #end if
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35 #if $sourceversion:
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36 --sourceversion "$sourceversion"
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37 #end if
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38 #if $sourceuri:
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39 --sourceuri "$sourceuri"
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40 #end if
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41 #if $date_executed:
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42 --date_executed "$date_executed"
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43 #end if
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44
6
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45 | jq -S . > '$results'
0
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46 ]]></command>
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47 <inputs>
4
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48 <param name="analysis_id" label="Analysis Id" argument="analysis_id" type="integer" optional="true" help="An analysis ID" />
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49 <param name="name" label="Name" argument="name" type="text" optional="true" help="analysis name" />
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50 <param name="program" label="Program" argument="program" type="text" optional="true" help="analysis program" />
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51 <param name="programversion" label="Programversion" argument="programversion" type="text" optional="true" help="analysis programversion" />
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52 <param name="algorithm" label="Algorithm" argument="algorithm" type="text" optional="true" help="analysis algorithm" />
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53 <param name="sourcename" label="Sourcename" argument="sourcename" type="text" optional="true" help="analysis sourcename" />
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54 <param name="sourceversion" label="Sourceversion" argument="sourceversion" type="text" optional="true" help="analysis sourceversion" />
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55 <param name="sourceuri" label="Sourceuri" argument="sourceuri" type="text" optional="true" help="analysis sourceuri" />
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56 <param name="date_executed" label="Date Executed" argument="date_executed" type="text" optional="true" help="analysis date_executed (yyyy-mm-dd)" />
0
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57 </inputs>
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58 <outputs>
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59 <data format="json" name="results" label="Tripal analyses" />
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60 </outputs>
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61 <tests>
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62 <test expect_failure="true">
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63 <param name="analysis_id" value="3" />
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64
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65 <expand macro="test_result" />
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66 </test>
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67 </tests>
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68 <help><![CDATA[
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69 @HELP_OVERVIEW@
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70
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71 **Get Analyses**
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72
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73 With this tool, you can list analyses from the Tripal/Chado database.
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74
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75 @HELP@
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76 ]]></help>
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77 <expand macro="citation"/>
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78 </tool>