Mercurial > repos > gga > tripal_analysis_get_analyses
annotate analysis_get_analyses.xml @ 7:6dd84962af74 draft default tip
"planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit ea279e5b47cf3d5767328d17b0e40e57b0238ea1"
author | gga |
---|---|
date | Wed, 14 Aug 2019 09:52:24 -0400 |
parents | 68d3383b2fe4 |
children |
rev | line source |
---|---|
0
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
1 <?xml version="1.0"?> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
2 <tool id="analysis_get_analyses" profile="16.04" name="Get analyses" version="@WRAPPER_VERSION@.0"> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
3 <description>from Tripal</description> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
4 <macros> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
5 <import>macros.xml</import> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
6 </macros> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
7 <expand macro="requirements"> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
8 <requirement type="package" version="1.5">jq</requirement> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
9 </expand> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
10 <expand macro="stdio"/> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
11 <command><![CDATA[ |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
12 |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
13 @AUTH@ |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
14 |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
15 tripaille analysis get_analyses |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
16 |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
17 #if $analysis_id: |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
18 --analysis_id "$analysis_id" |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
19 #end if |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
20 #if $name: |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
21 --name "$name" |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
22 #end if |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
23 #if $program: |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
24 --program "$program" |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
25 #end if |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
26 #if $programversion: |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
27 --programversion "$programversion" |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
28 #end if |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
29 #if $algorithm: |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
30 --algorithm "$algorithm" |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
31 #end if |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
32 #if $sourcename: |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
33 --sourcename "$sourcename" |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
34 #end if |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
35 #if $sourceversion: |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
36 --sourceversion "$sourceversion" |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
37 #end if |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
38 #if $sourceuri: |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
39 --sourceuri "$sourceuri" |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
40 #end if |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
41 #if $date_executed: |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
42 --date_executed "$date_executed" |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
43 #end if |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
44 |
6
68d3383b2fe4
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit 35c5eff77b573a66f3611b4906417df9a440c857
gga
parents:
4
diff
changeset
|
45 | jq -S . > '$results' |
0
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
46 ]]></command> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
47 <inputs> |
4
c5c887aafeb6
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents:
0
diff
changeset
|
48 <param name="analysis_id" label="Analysis Id" argument="analysis_id" type="integer" optional="true" help="An analysis ID" /> |
c5c887aafeb6
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents:
0
diff
changeset
|
49 <param name="name" label="Name" argument="name" type="text" optional="true" help="analysis name" /> |
c5c887aafeb6
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents:
0
diff
changeset
|
50 <param name="program" label="Program" argument="program" type="text" optional="true" help="analysis program" /> |
c5c887aafeb6
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents:
0
diff
changeset
|
51 <param name="programversion" label="Programversion" argument="programversion" type="text" optional="true" help="analysis programversion" /> |
c5c887aafeb6
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents:
0
diff
changeset
|
52 <param name="algorithm" label="Algorithm" argument="algorithm" type="text" optional="true" help="analysis algorithm" /> |
c5c887aafeb6
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents:
0
diff
changeset
|
53 <param name="sourcename" label="Sourcename" argument="sourcename" type="text" optional="true" help="analysis sourcename" /> |
c5c887aafeb6
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents:
0
diff
changeset
|
54 <param name="sourceversion" label="Sourceversion" argument="sourceversion" type="text" optional="true" help="analysis sourceversion" /> |
c5c887aafeb6
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents:
0
diff
changeset
|
55 <param name="sourceuri" label="Sourceuri" argument="sourceuri" type="text" optional="true" help="analysis sourceuri" /> |
c5c887aafeb6
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f2d24488fcdce07b02c61451716dfcf0b8900167
gga
parents:
0
diff
changeset
|
56 <param name="date_executed" label="Date Executed" argument="date_executed" type="text" optional="true" help="analysis date_executed (yyyy-mm-dd)" /> |
0
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
57 </inputs> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
58 <outputs> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
59 <data format="json" name="results" label="Tripal analyses" /> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
60 </outputs> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
61 <tests> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
62 <test expect_failure="true"> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
63 <param name="analysis_id" value="3" /> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
64 |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
65 <expand macro="test_result" /> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
66 </test> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
67 </tests> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
68 <help><![CDATA[ |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
69 @HELP_OVERVIEW@ |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
70 |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
71 **Get Analyses** |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
72 |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
73 With this tool, you can list analyses from the Tripal/Chado database. |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
74 |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
75 @HELP@ |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
76 ]]></help> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
77 <expand macro="citation"/> |
a0def5a5c1dd
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/tripal commit f745b23c84a615bf434d717c8c0e553a012f0268
gga
parents:
diff
changeset
|
78 </tool> |