Mercurial > repos > gga > chado_phylogeny_load_tree

diff phylogeny_load_tree.xml @ 13:4cb982070305 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author gga
date Mon, 08 Jul 2019 05:18:56 -0400
parents ef94e181664c
children 97a54e31a364
line wrap: on
line diff
--- a/phylogeny_load_tree.xml	Wed Mar 27 17:14:46 2019 -0400
+++ b/phylogeny_load_tree.xml	Mon Jul 08 05:18:56 2019 -0400
@@ -12,7 +12,7 @@
 	tar -C 'newick_arch/' -xzvf '${input.newick_arch}' > /dev/null &&
 #end if
 
-@AUTH@
+@START_PSQL@ &&
 
 chakin phylogeny load_tree
 
@@ -41,8 +41,11 @@
 #end if
 
 '$analysis_id' > '$results'
+
+&& @ZIP_PSQL@
     ]]></command>
 	<inputs>
+		<expand macro="psql_target"/>
 		<param argument="analysis_id"
 			type="select"
 			dynamic_options="list_analyses()"
@@ -72,6 +75,9 @@
 	</inputs>
 	<outputs>
 		<data format="txt" name="results"/>
+    <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}">
+      <filter>psql_target['method'] == "pgtools"</filter>
+    </data>
 	</outputs>
 	<help>
 Load a phylogenetic tree (Newick format) into Chado db