# HG changeset patch
# User gga
# Date 1562848221 14400
# Node ID fe6eb7a3f1d5a054d4ed2e3c2ed8b7913f708749
# Parent 7a03cc66f0bf6c8f0c4c9595cb1268213c84f1bc
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit bc69ce09372c8c2701b726c326e671af279adb4d
diff -r 7a03cc66f0bf -r fe6eb7a3f1d5 macros.xml
--- a/macros.xml Mon Jul 08 05:25:59 2019 -0400
+++ b/macros.xml Thu Jul 11 08:30:21 2019 -0400
@@ -89,32 +89,29 @@
- '.auth.yml' &&
- echo "local:" >> '.auth.yml' &&
- echo " dbhost: \"\$GALAXY_CHADO_DBHOST\"" >> '.auth.yml' &&
- echo " dbname: \"\$GALAXY_CHADO_DBNAME\"" >> '.auth.yml' &&
- echo " dbpass: \"\$GALAXY_CHADO_DBPASS\"" >> '.auth.yml' &&
- echo " dbuser: \"\$GALAXY_CHADO_DBUSER\"" >> '.auth.yml' &&
- echo " dbschema: \"\$GALAXY_CHADO_DBSCHEMA\"" >> '.auth.yml' &&
- echo " dbport: \"\$GALAXY_CHADO_DBPORT\"" >> '.auth.yml' &&
-
- export CHAKIN_GLOBAL_CONFIG_PATH='.auth.yml'
- ; fi
- ]]>
-
/dev/null &&
. '$__tool_directory__/prepare_psql.sh' '$psql_target.schema'
#else
- @AUTH@
+ if [ -z "\$CHAKIN_GLOBAL_CONFIG_PATH" ]; then
+ echo "__default: local" > '.auth.yml' &&
+ echo "local:" >> '.auth.yml' &&
+ echo " dbhost: \"\$GALAXY_CHADO_DBHOST\"" >> '.auth.yml' &&
+ echo " dbname: \"\$GALAXY_CHADO_DBNAME\"" >> '.auth.yml' &&
+ echo " dbpass: \"\$GALAXY_CHADO_DBPASS\"" >> '.auth.yml' &&
+ echo " dbuser: \"\$GALAXY_CHADO_DBUSER\"" >> '.auth.yml' &&
+ echo " dbschema: \"\$GALAXY_CHADO_DBSCHEMA\"" >> '.auth.yml' &&
+ echo " dbport: \"\$GALAXY_CHADO_DBPORT\"" >> '.auth.yml' &&
+
+ export CHAKIN_GLOBAL_CONFIG_PATH='.auth.yml'
+ ; fi
#end if
]]>
/dev/null
diff -r 7a03cc66f0bf -r fe6eb7a3f1d5 phylogeny_gene_families.xml
--- a/phylogeny_gene_families.xml Mon Jul 08 05:25:59 2019 -0400
+++ b/phylogeny_gene_families.xml Thu Jul 11 08:30:21 2019 -0400
@@ -1,5 +1,5 @@
-
+
for phylogeny module
macros.xml
@@ -18,7 +18,7 @@
> '$results'
- && @ZIP_PSQL@
+ @ZIP_PSQL@
]]>