# HG changeset patch # User gga # Date 1562848127 14400 # Node ID 29c58f9171aa5b8834b9e7315ae0ff56dbc2b2a5 # Parent 5204844da9d1a0f348052f1cbff894c5a7c9f9a5 planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit bc69ce09372c8c2701b726c326e671af279adb4d diff -r 5204844da9d1 -r 29c58f9171aa expression_delete_all_biomaterials.xml --- a/expression_delete_all_biomaterials.xml Mon Jul 08 05:24:02 2019 -0400 +++ b/expression_delete_all_biomaterials.xml Thu Jul 11 08:28:47 2019 -0400 @@ -1,5 +1,5 @@ - + macros.xml @@ -14,7 +14,7 @@ > '$results' - && @ZIP_PSQL@ + @ZIP_PSQL@ ]]> diff -r 5204844da9d1 -r 29c58f9171aa macros.xml --- a/macros.xml Mon Jul 08 05:24:02 2019 -0400 +++ b/macros.xml Thu Jul 11 08:28:47 2019 -0400 @@ -89,32 +89,29 @@ - '.auth.yml' && - echo "local:" >> '.auth.yml' && - echo " dbhost: \"\$GALAXY_CHADO_DBHOST\"" >> '.auth.yml' && - echo " dbname: \"\$GALAXY_CHADO_DBNAME\"" >> '.auth.yml' && - echo " dbpass: \"\$GALAXY_CHADO_DBPASS\"" >> '.auth.yml' && - echo " dbuser: \"\$GALAXY_CHADO_DBUSER\"" >> '.auth.yml' && - echo " dbschema: \"\$GALAXY_CHADO_DBSCHEMA\"" >> '.auth.yml' && - echo " dbport: \"\$GALAXY_CHADO_DBPORT\"" >> '.auth.yml' && - - export CHAKIN_GLOBAL_CONFIG_PATH='.auth.yml' - ; fi - ]]> - /dev/null && . '$__tool_directory__/prepare_psql.sh' '$psql_target.schema' #else - @AUTH@ + if [ -z "\$CHAKIN_GLOBAL_CONFIG_PATH" ]; then + echo "__default: local" > '.auth.yml' && + echo "local:" >> '.auth.yml' && + echo " dbhost: \"\$GALAXY_CHADO_DBHOST\"" >> '.auth.yml' && + echo " dbname: \"\$GALAXY_CHADO_DBNAME\"" >> '.auth.yml' && + echo " dbpass: \"\$GALAXY_CHADO_DBPASS\"" >> '.auth.yml' && + echo " dbuser: \"\$GALAXY_CHADO_DBUSER\"" >> '.auth.yml' && + echo " dbschema: \"\$GALAXY_CHADO_DBSCHEMA\"" >> '.auth.yml' && + echo " dbport: \"\$GALAXY_CHADO_DBPORT\"" >> '.auth.yml' && + + export CHAKIN_GLOBAL_CONFIG_PATH='.auth.yml' + ; fi #end if ]]> /dev/null