Mercurial > repos > gga > chado_expression_add_expression

diff expression_add_expression.xml @ 5:2997c4640067 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author gga
date Mon, 08 Jul 2019 05:24:30 -0400
parents fa3094eaee87
children 0a9efc1b5f73
line wrap: on
line diff
--- a/expression_add_expression.xml	Tue Mar 05 04:57:52 2019 -0500
+++ b/expression_add_expression.xml	Mon Jul 08 05:24:30 2019 -0400
@@ -7,7 +7,7 @@
     <expand macro="requirements"/>
     <code file="chado.py"/>
     <command detect_errors="aggressive"><![CDATA[
-@AUTH@
+@START_PSQL@ &&
 
 chakin expression add_expression
 '$organism_id'
@@ -15,8 +15,11 @@
 '$file_path'
 
  > '$results'
+
+&& @ZIP_PSQL@
     ]]></command>
     <inputs>
+        <expand macro="psql_target"/>
         <!-- arguments -->
         <param argument="organism_id" type="select" dynamic_options="list_organisms()" label="Organism" />
         <param argument="analysis_id" type="select" dynamic_options="list_analyses()"  label="Analysis" />
@@ -26,6 +29,9 @@
     </inputs>
     <outputs>
         <data format="txt" name="results"/>
+        <data format="postgresql" name="outfile" from_work_dir="postgresql_out.tar.bz2" label="${tool.name} on ${on_string}">
+			<filter>psql_target['method'] == "pgtools"</filter>
+		</data>
     </outputs>
     <help>
 Add an expression matrix file to the database