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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 0b135f1ea2623ea68e41ac88e13d99e6b4ad8bea
author gga
date Mon, 08 Jul 2019 05:20:02 -0400
parents bba42066ff39
children 88c8235f28b8
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<?xml version="1.0"?>
<tool id="export_export_fasta" name="Chado export fasta" version="@WRAPPER_VERSION@.0">
    <description></description>
    <macros>
        <import>macros.xml</import>
    </macros>
    <expand macro="requirements"/>
    <code file="chado.py"/>
    <command detect_errors="aggressive"><![CDATA[
@START_PSQL@ &&

chakin export export_fasta
'$organism'

 > '$results'

 && @STOP_PSQL@
    ]]></command>
    <inputs>
        <expand macro="psql_target"/>
        <!-- arguments -->
        <param argument="--organism" type="select" dynamic_options="list_organisms()" label="Organism" />
        <expand macro="wait_for"/>

    </inputs>
    <outputs>
        <data format="fasta" name="results"/>
    </outputs>
    <help>
Export reference sequences as fasta.

@HELP@
    </help>
</tool>