Mercurial > repos > gga > chado_export_export_fasta

diff export_export_fasta.xml @ 0:e27373068b1a draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit 81a83f06b49db32928ba0cd44e5b6d0431868d27
author gga
date Thu, 21 Jun 2018 08:29:51 -0400
parents
children 0c94491d84c0
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/export_export_fasta.xml	Thu Jun 21 08:29:51 2018 -0400
@@ -0,0 +1,34 @@
+<?xml version="1.0"?>
+<tool id="export_export_fasta" name="Chado export fasta" version="@WRAPPER_VERSION@.0">
+ 	<description></description>
+	<macros>
+		<import>macros.xml</import>
+	</macros>
+	<expand macro="requirements"/>
+    <code file="chado.py"/>
+	<command detect_errors="aggressive"><![CDATA[
+@AUTH@
+
+chakin export export_fasta
+'$organism'
+
+ > $results
+    ]]></command>
+	<inputs>
+        <!-- arguments -->
+        <param argument="--organism"
+               type="select"
+               dynamic_options="list_organisms()"
+               label="Organism" />
+   	    <expand macro="wait_for"/>
+
+	</inputs>
+	<outputs>
+		<data format="fasta" name="results"/>
+	</outputs>
+	<help>
+Export reference sequences as fasta.
+
+@HELP@
+	</help>
+</tool>