Mercurial > repos > gga > chado_analysis_add_analysis

comparison analysis_add_analysis.xml @ 7:29ad66d23660 draft

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planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/chado commit f5c5d81fc9781371e12b91c0d609b9201587cda5
author gga
date Fri, 23 Nov 2018 10:55:05 -0500
parents 9e1c992ea0be
children 39cc44d4bc70
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6:4048144dc6a6 7:29ad66d23660
1 <?xml version="1.0"?> 1 <?xml version="1.0"?>
2 <tool id="analysis_add_analysis" name="Chado analysis add" version="@WRAPPER_VERSION@.0"> 2 <tool id="analysis_add_analysis" name="Chado analysis add" version="@WRAPPER_VERSION@.0">
3 <description></description> 3 <description></description>
4 <macros> 4 <macros>
5 <import>macros.xml</import> 5 <import>macros.xml</import>
6 </macros> 6 </macros>
7 <expand macro="requirements"/> 7 <expand macro="requirements"/>
8 <command detect_errors="aggressive"><![CDATA[ 8 <command detect_errors="aggressive"><![CDATA[
9 @AUTH@ 9 @AUTH@
10 10
11 chakin analysis add_analysis 11 chakin analysis add_analysis
12 '$name' 12 '$name'
13 '$program' 13 '$program'
30 --date_executed '$date_executed' 30 --date_executed '$date_executed'
31 #end if 31 #end if
32 32
33 | jq -S . > $results 33 | jq -S . > $results
34 ]]></command> 34 ]]></command>
35 <inputs> 35 <inputs>
36 <!-- arguments --> 36 <!-- arguments -->
37 <param name="name" label="Name" argument="name" type="text" help="analysis name" /> 37 <param name="name" label="Name" argument="name" type="text" help="analysis name" />
38 <param name="program" label="Program" argument="program" type="text" help="analysis program" /> 38 <param name="program" label="Program" argument="program" type="text" help="analysis program" />
39 <param name="programversion" label="Programversion" argument="programversion" type="text" help="analysis programversion" /> 39 <param name="programversion" label="Programversion" argument="programversion" type="text" help="analysis programversion" />
40 <param name="sourcename" label="Sourcename" argument="sourcename" type="text" help="analysis sourcename" /> 40 <param name="sourcename" label="Sourcename" argument="sourcename" type="text" help="analysis sourcename" />
41 41
42 <!-- options --> 42 <!-- options -->
43 <param name="algorithm" label="Algorithm" argument="algorithm" type="text" help="analysis algorithm" optional="True" /> 43 <param name="algorithm" label="Algorithm" argument="--algorithm" type="text" help="analysis algorithm" optional="True" />
44 <param name="sourceversion" label="Sourceversion" argument="sourceversion" type="text" help="analysis sourceversion" optional="True" /> 44 <param name="sourceversion" label="Sourceversion" argument="--sourceversion" type="text" help="analysis sourceversion" optional="True" />
45 <param name="sourceuri" label="Sourceuri" argument="sourceuri" type="text" help="analysis sourceuri" optional="True" /> 45 <param name="sourceuri" label="Sourceuri" argument="--sourceuri" type="text" help="analysis sourceuri" optional="True" />
46 <param name="description" label="Description" argument="description" type="text" help="analysis description" optional="True" /> 46 <param name="description" label="Description" argument="--description" type="text" help="analysis description" optional="True" />
47 <param name="date_executed" label="Date Executed" argument="date_executed" type="text" optional="True" help="analysis date_executed (yyyy-mm-dd)"> 47 <param name="date_executed" label="Date Executed" argument="--date_executed" type="text" optional="True" help="analysis date_executed (yyyy-mm-dd)">
48 <validator type="regex" message="Date in YYYY-MM-DD format">^[0-9]{4}-[0-9]{2}-[0-9]{2}$</validator> 48 <validator type="regex" message="Date in YYYY-MM-DD format">^[0-9]{4}-[0-9]{2}-[0-9]{2}$</validator>
49 </param> 49 </param>
50 50
51 </inputs> 51 </inputs>
52 <outputs> 52 <outputs>
53 <data format="json" name="results"/> 53 <data format="json" name="results"/>
54 </outputs> 54 </outputs>
55 <help> 55 <help>
56 Create an analysis 56 Create an analysis
57 57
58 @HELP@ 58 @HELP@
59 </help> 59 </help>
60 </tool> 60 </tool>