# HG changeset patch
# User gga
# Date 1554917387 14400
# Node ID bf5179cf1375c26e836e23d7e1c62d043540af63
# Parent  d8cd7cbe2b03e2607bddcb99d2dacbcef2efc99e
planemo upload for repository https://github.com/galaxy-genome-annotation/galaxy-tools/tree/master/tools/apollo commit 2488ac4ea447c45886ce5c7b102fb28c5839d26b

diff -r d8cd7cbe2b03 -r bf5179cf1375 create_or_update_organism.py
--- a/create_or_update_organism.py	Fri Mar 15 06:02:01 2019 -0400
+++ b/create_or_update_organism.py	Wed Apr 10 13:29:47 2019 -0400
@@ -47,7 +47,7 @@
     if(os.path.exists(args.jbrowse)):
         shutil.rmtree(args.jbrowse)
     # Copy files
-    shutil.copytree(args.jbrowse_src, args.jbrowse)
+    shutil.copytree(args.jbrowse_src, args.jbrowse, symlinks=True)
 
     path_fasta = args.jbrowse + '/seq/genome.fasta'
     path_2bit = args.jbrowse + '/seq/genome.2bit'